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Exact distributions for stochastic gene expression models with bursting and feedback.

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TLDR
This work analyzes a model of gene expression with bursting and feedback regulation and obtains exact results for the corresponding protein steady-state distribution and provides new insights into the role ofbursting and feedback in noise regulation and optimization.
Abstract
Stochasticity in gene expression can give rise to fluctuations in protein levels and lead to phenotypic variation across a population of genetically identical cells. Recent experiments indicate that bursting and feedback mechanisms play important roles in controlling noise in gene expression and phenotypic variation. A quantitative understanding of the impact of these factors requires analysis of the corresponding stochastic models. However, for stochastic models of gene expression with feedback and bursting, exact analytical results for protein distributions have not been obtained so far. Here, we analyze a model of gene expression with bursting and feedback regulation and obtain exact results for the corresponding protein steady-state distribution. The results obtained provide new insights into the role of bursting and feedback in noise regulation and optimization. Furthermore, for a specific choice of parameters, the system studied maps on to a two-state biochemical switch driven by a bursty input noise source. The analytical results derived provide quantitative insights into diverse cellular processes involving noise in gene expression and biochemical switching.

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Journal ArticleDOI

Proceedings of the National Academy of Sciences

TL;DR: It is shown that the full set of hydromagnetic equations admit five more integrals, besides the energy integral, if dissipative processes are absent, which made it possible to formulate a variational principle for the force-free magnetic fields.
Journal ArticleDOI

Approximation and inference methods for stochastic biochemical kinetics—a tutorial review

TL;DR: An introduction to basic modelling concepts as well as an overview of state of the art methods for stochastic chemical kinetics is given, including the chemical Langevin equation, the system size expansion, moment closure approximation, time-scale separation approximations and hybrid methods.
Journal ArticleDOI

Transcriptional Bursting in Gene Expression: Analytical Results for General Stochastic Models.

TL;DR: A mapping between general stochastic models of gene expression and systems studied in queueing theory is invoked to derive exact analytical expressions for the moments associated with mRNA/protein steady-state distributions, and approaches for accurate estimation of burst parameters are developed.
Journal ArticleDOI

Approximation and inference methods for stochastic biochemical kinetics - a tutorial review

TL;DR: In this article, a self-contained introduction to modeling, approximations and inference methods for stochastic chemical kinetics is given, as well as a comparison of several of these methods by means of a numerical case study.
Journal ArticleDOI

Linear mapping approximation of gene regulatory networks with stochastic dynamics

TL;DR: A linear-mapping approximation is presented that maps systems with protein–promoter interactions onto approximately equivalent systems with no binding reactions, giving approximate but accurate analytic or semi- analytic solutions for a wide range of model GRNs.
References
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Book

Stochastic processes in physics and chemistry

TL;DR: In this article, the authors introduce the Fokker-planck equation, the Langevin approach, and the diffusion type of the master equation, as well as the statistics of jump events.
Journal ArticleDOI

Proceedings of the National Academy of Sciences

TL;DR: It is shown that the full set of hydromagnetic equations admit five more integrals, besides the energy integral, if dissipative processes are absent, which made it possible to formulate a variational principle for the force-free magnetic fields.
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