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Journal ArticleDOI

Forced thermal ratchets.

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TLDR
In this paper, the authors considered a Brownian particle in a periodic potential under heavy damping and showed that if the particle is subject to an external force having time correlations, detailed balance is lost and the particle can exhibit a nonzero net drift speed.
Abstract
We consider a Brownian particle in a periodic potential under heavy damping. The second law forbids it from displaying any net drift speed, even if the symmetry of the potential is broken. But if the particle is subject to an external force having time correlations, detailed balance is lost and the particle can exhibit a nonzero net drift speed. Thus, broken symmetry and time correlations are sufficient ingredients for transport.

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Journal ArticleDOI

The Goldbeter-Koshland switch in the first-order region and its response to dynamic disorder.

TL;DR: This work showed that the switching behavior can also occur under comparable concentrations of signals and substrates, provided that the signal molecules catalyze the modification reaction in cooperation, and demonstrated that the system is robust to dynamic disorder at bulk concentration.
Journal ArticleDOI

Efficiency optimization in a correlation ratchet with asymmetric unbiased fluctuations.

TL;DR: It is found that even on the quasistatic limit there is a regime where the efficiency can be a peaked function of temperature, which proves that thermal fluctuations facilitate the efficiency of energy transformation, contradicting the earlier findings.
Posted Content

Synchronized First-Passages in a Double-Well System

TL;DR: In this paper, Langevin dynamic numerical simulation on a double-well potential system subjected to an asymmetric saw-tooth type external time varying field and white noise forces is performed.
Patent

Scodaphoresis and methods and apparatus for moving and concentrating particles

TL;DR: In this paper, an alternating driving field and a mobility-varying field are correlated with one another to move and concentrate DNA or RNA in a medium, for example, to extract particles from one medium into another.
Book ChapterDOI

Motor Proteins as Nanomachines: The Roles of Thermal Fluctuations in Generating Force and Motion

TL;DR: It is argued that kinesin, which has two motor domains or “heads,” walks using a “hand-over-hand” mechanism such that at least one head is bound to the microtubule, and several molecular models for motor proteins are discussed, including so-called ratchet models.
References
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Book

Stochastic processes in physics and chemistry

TL;DR: In this article, the authors introduce the Fokker-planck equation, the Langevin approach, and the diffusion type of the master equation, as well as the statistics of jump events.

Stochastic Processes in Physics and Chemistry

Abstract: Preface to the first edition. Preface to the second edition. Abbreviated references. I. Stochastic variables. II. Random events. III. Stochastic processes. IV. Markov processes. V. The master equation. VI. One-step processes. VII. Chemical reactions. VIII. The Fokker-Planck equation. IX. The Langevin approach. X. The expansion of the master equation. XI. The diffusion type. XII. First-passage problems. XIII. Unstable systems. XIV. Fluctuations in continuous systems. XV. The statistics of jump events. XVI. Stochastic differential equations. XVII. Stochastic behavior of quantum systems.
Book

Molecular Cell Biology

TL;DR: Molecular cell biology, Molecular cell biology , مرکز فناوری اطلاعات و اصاع رسانی, کδاوρزی
Book

The Fokker-Planck Equation: Methods of Solution and Applications

Hannes Risken
TL;DR: In this paper, the Fokker-Planck Equation for N Variables (FPE) was extended to N = 1 variable and N = 2 variables, where N is the number of variables in the system.