Genome-wide Identification and Analysis of Cytokinin Dehydrogenase/oxidase (CKX) Family Genes in Brassica oleracea L. Reveals Their Involvement in Response to Plasmodiophora brassicae Infections
Feng Wang,Mingzhao Zhu,Yong Wang,Shujin Lu,Limei Yang,Mu Zhuang,Yangyong Zhang,Honghao Lv,Zhiyuan Fang,Xilin Hou +9 more
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TLDR
Three genes were significantly down-regulated and up-regulated in the susceptible and resistant material, respectively, after inoculation, which may indicate their crucial roles in resistance to clubroot disease.About:
This article is published in Horticultural Plant Journal.The article was published on 2021-05-24 and is currently open access. It has received 10 citations till now. The article focuses on the topics: Biology & Gene.read more
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Genome-wide identification and analysis of the cytokinin oxidase/dehydrogenase (ckx) gene family in finger millet (Eleusine coracana)
Rostyslav Blume,Alla I. Yemets,Vitaliy Korkhovyi,Volodymyr Radchuk,Dzhamal Rakhmetov,Yaroslav B. Blume +5 more
TL;DR: A comprehensive genome-wide identification and analysis of a panel of CKX genes in finger millet shows that lines deficient in CKX-expression demonstrate increased grain yield and greater bushiness, enhanced biomass accumulation, and a shorter vegetation cycle.
Journal ArticleDOI
Genome-wide identification of the soybean cytokinin oxidase/dehydrogenase gene family and its diverse roles in response to multiple abiotic stress
Yanli Du,Zhao Song Zhang,Yanhua Gu,Weijia Li,Weiyu Wang,Xiankai Yuan,Yuxian Zhang,Ming Yan,Ji Dao Du,Qiang Zhao +9 more
TL;DR: In this article , the evolutionary relationship, chromosomal location, gene structure, motifs, cis-regulatory elements, collinearity, and gene expression patterns of GmCKXs were analyzed using RNA-seq, quantitative real-time PCR (qRT-PCR), and bioinformatics.
Journal ArticleDOI
Killing two birds with a single stone—genetic manipulation of cytokinin oxidase/dehydrogenase (CKX) genes for enhancing crop productivity and amelioration of drought stress response
TL;DR: The role of CKX is emphasized as a genetic factor determining yield, micronutrient uptake efficiency, and response to drought stress in different crop species through genetic manipulation of CK x genes.
Journal ArticleDOI
Genome-wide association study reveals candidate genes for gummy stem blight resistance in cucumber
Jianan Han,Shaoyun Dong,Yanxia Shi,Zhuonan Dai,Han Miao,Baoju Li,Xingfang Gu,Shengping Zhang +7 more
TL;DR: In this paper , the authors investigated the GSB resistance of cucumber core germplasms from four geographic groups at the seedling and adult stages and identified a total of 9 SNPs related to gummy stem blight (GSB) resistance at seedling stage and 26 SNPs at the adult stage were identified, of which some a few are co-localized to previously mapped QTLs (Quantitative trait loci) for gSB resistance (gsb3.2/gsb 3.3, gsb5.1, and gsb6.2).
Journal ArticleDOI
Genome-Wide Analysis and Evolutionary Perspective of the Cytokinin Dehydrogenase Gene Family in Wheat (Triticum aestivum L.)
Priyanka Jain,Ankita Singh,Mir Asif Iquebal,Sarika Jaiswal,Sundeep Kumar,Dinesh Kumar,Anil Rai +6 more
TL;DR: A genome-wide identification of CKX family members in the Triticum aestivum genome was performed to get their chromosomal location, gene structure, cis-element, phylogeny, synteny, and tissue- and stage-specific expression along with gene ontology.
References
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MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
TL;DR: An advanced version of the Molecular Evolutionary Genetics Analysis software, which currently contains facilities for building sequence alignments, inferring phylogenetic histories, and conducting molecular evolutionary analysis, is released, which enables the inference of timetrees, as it implements the RelTime method for estimating divergence times for all branching points in a phylogeny.
Brief Communication MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
TL;DR: The Molecular Evolutionary Genetics Analysis (MEGA) software as discussed by the authors provides facilities for building sequence alignments, inferring phylogenetic histories, and conducting molecular evolutionary analysis, including the inference of timetrees.
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DnaSP v5
Pablo Librado,Julio Rozas +1 more
TL;DR: Version 5 implements a number of new features and analytical methods allowing extensive DNA polymorphism analyses on large datasets, including visualizing sliding window results integrated with available genome annotations in the UCSC browser.
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HMMER web server: interactive sequence similarity searching
TL;DR: This work has focused on minimizing search times and the ability to rapidly display tabular results, regardless of the number of matches found, developing graphical summaries of the search results to provide quick, intuitive appraisement of them.