scispace - formally typeset
Open AccessJournal ArticleDOI

Graph-Based Deep Learning for Medical Diagnosis and Analysis: Past, Present and Future

TLDR
A survey of different types of graph architectures and their applications in healthcare can be found in this article, where the authors provide an overview of these methods in a systematic manner, organized by their domain of application including functional connectivity, anatomical structure and electrical-based analysis.
Abstract
With the advances of data-driven machine learning research, a wide variety of prediction problems have been tackled. It has become critical to explore how machine learning and specifically deep learning methods can be exploited to analyse healthcare data. A major limitation of existing methods has been the focus on grid-like data; however, the structure of physiological recordings are often irregular and unordered which makes it difficult to conceptualise them as a matrix. As such, graph neural networks have attracted significant attention by exploiting implicit information that resides in a biological system, with interactive nodes connected by edges whose weights can be either temporal associations or anatomical junctions. In this survey, we thoroughly review the different types of graph architectures and their applications in healthcare. We provide an overview of these methods in a systematic manner, organized by their domain of application including functional connectivity, anatomical structure and electrical-based analysis. We also outline the limitations of existing techniques and discuss potential directions for future research.

read more

Citations
More filters
Journal ArticleDOI

A survey on graph-based deep learning for computational histopathology

TL;DR: In this paper , the authors provide a conceptual grounding for graph analytics in digital pathology, including entity-graph construction and graph architectures, and present their current success for tumor localization and classification, tumor invasion and staging, image retrieval, and survival prediction.
Journal ArticleDOI

Graph Neural Networks in IoT: A Survey

TL;DR: A comprehensive review of recent advances in the application of graph neural networks to the IoT field is presented, including a deep dive analysis of GNN design in various IoT sensing environments, an overarching list of public data and source codes from the collected publications, and future research directions.
Journal ArticleDOI

Neonatal Jaundice Diagnosis Using a Smartphone Camera Based on Eye, Skin, and Fused Features with Transfer Learning.

TL;DR: In this article, the authors adopt a deep transfer learning approach based on eye, skin, and fused images to diagnose neonatal jaundice using a smartphone camera and compared their performance with that of traditional machine learning models.
Journal ArticleDOI

PD-ResNet for Classification of Parkinson’s Disease From Gait

TL;DR: A novel model based on residual network (ResNet) architecture, named PD-ResNet, is designed to learn the gait differences between PD and HC and between PD with different severity levels, and shows better performance than the traditional machine learning and deep learning methods.
Proceedings ArticleDOI

Computing Hierarchical Complexity of the Brain from Electroencephalogram Signals: A Graph Convolutional Network-based Approach

TL;DR: In this paper , a two-layered Visible-Graph Convolutional Network (VGCN) is proposed to project each channel's EEG sample onto nodes of a graph with weighted edges formulated as per the hierarchical visibility among nodes.
References
More filters
Proceedings Article

Attention is All you Need

TL;DR: This paper proposed a simple network architecture based solely on an attention mechanism, dispensing with recurrence and convolutions entirely and achieved state-of-the-art performance on English-to-French translation.
Journal ArticleDOI

Deep learning

TL;DR: Deep learning is making major advances in solving problems that have resisted the best attempts of the artificial intelligence community for many years, and will have many more successes in the near future because it requires very little engineering by hand and can easily take advantage of increases in the amount of available computation and data.
Proceedings ArticleDOI

Learning Phrase Representations using RNN Encoder--Decoder for Statistical Machine Translation

TL;DR: In this paper, the encoder and decoder of the RNN Encoder-Decoder model are jointly trained to maximize the conditional probability of a target sequence given a source sequence.
Journal ArticleDOI

PhysioBank, PhysioToolkit, and PhysioNet: components of a new research resource for complex physiologic signals.

TL;DR: The newly inaugurated Research Resource for Complex Physiologic Signals (RRSPS) as mentioned in this paper was created under the auspices of the National Center for Research Resources (NCR Resources).
Journal ArticleDOI

Complex brain networks: graph theoretical analysis of structural and functional systems

TL;DR: This article reviews studies investigating complex brain networks in diverse experimental modalities and provides an accessible introduction to the basic principles of graph theory and highlights the technical challenges and key questions to be addressed by future developments in this rapidly moving field.
Related Papers (5)
Trending Questions (3)
What are graph neural networks and their role in healthcare?

Graph neural networks are used in healthcare to analyze physiological recordings that have irregular and unordered structures, allowing for the exploration of implicit information in biological systems.

What are graph neural networks and What are the key applications of graph neural networks in healthcare?

Graph neural networks are a type of machine learning model that can analyze irregular and unordered data. They have been used in healthcare for applications such as functional connectivity, anatomical structure, and electrical-based analysis.

What are the challenges in applying graph neural networks in precision medicine?

The paper does not specifically mention the challenges in applying graph neural networks in precision medicine.