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Insight into the Self-Insertion of a Protein Inside the Boron Nitride Nanotube.

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TLDR
In the present work, the self-insertion process of the protein SmtA, metallothionein, into the BNNT has been verified by means of the molecular dynamics simulation under NPT ensemble and it was revealed that the protein was self- Inserted into the boron nitride nanotubes through the protein–BNNT van der Waals interaction.
Abstract
Nanotubes have been considered as promising candidates for protein delivery purposes due to distinct features such as their large enough volume of cavity to encapsulate the protein, providing the sustain and target release. Moreover, possessing the properties of suitable cell viabilities, and biocompatibility on the wide range of cell lines as a result of structural stability, chemical inertness, and noncovalent wrapping ability, boron nitride nanotubes (BNNTs) have caught further attention as protein nanocarriers. However, to assess the encapsulation process of the protein into the BNNT, it is vital to comprehend the protein-BNNT interaction. In the present work, the self-insertion process of the protein SmtA, metallothionein, into the BNNT has been verified by means of the molecular dynamics (MD) simulation under NPT ensemble. It was revealed that the protein was self-inserted into the BNNT through the protein-BNNT van der Waals (vdW) interaction, which descended and reached the average value of -189.63 kcal·mol-1 at 15 ns of the simulation time. The potential mean force (PMF) profile of the encapsulated protein with increasing trend, which was obtained via the pulling process unraveled that the encapsulation of the protein into the BNNT cavity proceeded spontaneously and the self-inserted protein had reasonable stability. Moreover, due to the strong hydrogen interactions between the nitrogen atoms of BNNT and hydrogen atoms of SmtA, there was no evidence of an energy barrier in the vicinity of the BNNT entrance, which resulted in the rapid adsorption of this protein into the BNNT.

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Citations
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Fast parallel algorithms for short-range molecular dynamics

TL;DR: Comparing the results to the fastest reported vectorized Cray Y-MP and C90 algorithm shows that the current generation of parallel machines is competitive with conventional vector supercomputers even for small problems.
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Fracture mechanics of polycrystalline beryllium oxide nanosheets: A theoretical basis

TL;DR: In this article, the effect of the number of grains (4, 9, 16, 25, and 36) and defects (typical cracks and circular notches with different lengths and dimeters) on the mechanical properties of square-shaped polycrystalline beryllium-oxide nanosheets with the length of 300 A (L) was analyzed.
References
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Journal ArticleDOI

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Jerry Tersoff
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Cytotoxicity of Nanoparticles

TL;DR: For nanoparticles to move into the clinical arena, it is important that nanotoxicology research uncovers and understands how these multiple factors influence the toxicity of nanoparticles so that their undesirable properties can be avoided.
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Calculating potentials of mean force from steered molecular dynamics simulations.

TL;DR: It is demonstrated that the work on the system is Gaussian-distributed regardless of the speed of the process simulated, which means that the cumulant expansion of Jarzynski's equality can be safely terminated at second order.
Journal ArticleDOI

Multi-walled carbon nanotubes induce T lymphocyte apoptosis

TL;DR: The toxicity of pristine and oxidized multi-walled carbon nanotubes on human T cells is compared and it is found that the latter are more toxic and induce massive loss of cell viability through programmed cell death at doses of 400 microg/ml, which corresponds to approximately 10 million carbon Nanotubes per cell.
Journal ArticleDOI

Boron Nitride Nanotubes Are Noncytotoxic and Can Be Functionalized for Interaction with Proteins and Cells

TL;DR: The discovery that boron nitride nanotubes (BNNTs), isosteres of CNTs with unique physical properties, are inherently noncytotoxic is reported and it is shown that BNNTs can deliver DNA oligomers to the interior of cells with no apparent toxicity.
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