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Link prediction in complex networks: A survey

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TLDR
Recent progress about link prediction algorithms is summarized, emphasizing on the contributions from physical perspectives and approaches, such as the random-walk-based methods and the maximum likelihood methods.

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Multiscale Embedded Gene Co-expression Network Analysis.

TL;DR: A new co- expression network analysis framework called Multiscale Embedded Gene Co-expression Network Analysis (MEGENA) is developed by introducing quality control of co-expression similarities, parallelizing embedded network construction, and developing a novel clustering technique to identify multi-scale clustering structures in Planar Filtered Networks (PFNs).
Journal ArticleDOI

Evaluating link prediction methods

TL;DR: This work describes challenges in the evaluation of link prediction, provides theoretical proofs and empirical examples demonstrating how current methods lead to questionable conclusions, and shows how the fallacy of these conclusions is illuminated by methods proposed.
Proceedings ArticleDOI

Revisiting User Mobility and Social Relationships in LBSNs: A Hypergraph Embedding Approach

TL;DR: The asymmetric impact of mobility and social relationships on predicting each other is discovered, which can serve as guidelines for future research on friendship and location prediction in LBSNs.
Journal ArticleDOI

Identifying influential spreaders by weighted LeaderRank

TL;DR: According to the simulations on the standard SIR model, the weighted LeaderRank performs better than LeaderRank in three aspects: the ability to find out more influential spreaders; the higher tolerance to noisy data; and the higher robustness to intentional attacks.
Journal ArticleDOI

Predicting potential drug-drug interactions by integrating chemical, biological, phenotypic and network data

TL;DR: The experiments demonstrate that different data sources provide diverse information, and the DDI network based on known DDIs is one of most important information for DDI prediction, as the ensemble methods can produce better performances than individual methods, and outperform existing state-of-the-art methods.
References
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Journal ArticleDOI

Collective dynamics of small-world networks

TL;DR: Simple models of networks that can be tuned through this middle ground: regular networks ‘rewired’ to introduce increasing amounts of disorder are explored, finding that these systems can be highly clustered, like regular lattices, yet have small characteristic path lengths, like random graphs.
Journal ArticleDOI

Equation of state calculations by fast computing machines

TL;DR: In this article, a modified Monte Carlo integration over configuration space is used to investigate the properties of a two-dimensional rigid-sphere system with a set of interacting individual molecules, and the results are compared to free volume equations of state and a four-term virial coefficient expansion.
Journal ArticleDOI

Emergence of Scaling in Random Networks

TL;DR: A model based on these two ingredients reproduces the observed stationary scale-free distributions, which indicates that the development of large networks is governed by robust self-organizing phenomena that go beyond the particulars of the individual systems.
Journal ArticleDOI

The meaning and use of the area under a receiver operating characteristic (ROC) curve.

James A. Hanley, +1 more
- 01 Apr 1982 - 
TL;DR: A representation and interpretation of the area under a receiver operating characteristic (ROC) curve obtained by the "rating" method, or by mathematical predictions based on patient characteristics, is presented and it is shown that in such a setting the area represents the probability that a randomly chosen diseased subject is (correctly) rated or ranked with greater suspicion than a random chosen non-diseased subject.
Journal ArticleDOI

Statistical mechanics of complex networks

TL;DR: In this paper, a simple model based on the power-law degree distribution of real networks was proposed, which was able to reproduce the power law degree distribution in real networks and to capture the evolution of networks, not just their static topology.