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Link prediction in complex networks: A survey

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TLDR
Recent progress about link prediction algorithms is summarized, emphasizing on the contributions from physical perspectives and approaches, such as the random-walk-based methods and the maximum likelihood methods.

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Subgraph Robustness of Complex Networks Under Attacks

TL;DR: By introducing the subgraph robustness problem, this work develops analytically a framework to investigate robustness properties of the two types of subgraphs under random attacks, localized attacks, and targeted attacks and finds that the benchmark models, such as Erdős-Rényi graphs, random regular networks, and scale-free networks possess distinct characteristic subgraph resilient features.
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Computational/in silico methods in drug target and lead prediction.

TL;DR: An overview of various computational methods and tools applied in predicting or validating drug targets and drug-like molecules is presented and might guide researchers on selecting the most efficient approach or technique during the computational drug discovery process.
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The Statistical Physics of Real-World Networks

TL;DR: In this article, a survey of statistical physics models that reproduce more complex, semi-local network features using Markov chain Monte Carlo sampling, as well as the models of generalised network structures such as multiplex networks, interacting networks and simplicial complexes is presented.
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A Novel Method for LncRNA-Disease Association Prediction Based on an lncRNA-Disease Association Network

TL;DR: A bipartite network based on known lncRNA-disease associations is constructed and a novel model for inferring potential lncRNAs associations is proposed, which significantly outperformed previous state-of-the-art models.
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Protein–protein interactions: detection, reliability assessment and applications

TL;DR: This research will provide readers some guidance for choosing appropriate methods and features for obtaining reliable PPIs, and also enumerate several PPI network-based applications with taking a reliability assessment of the PPI data into consideration.
References
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Journal ArticleDOI

Collective dynamics of small-world networks

TL;DR: Simple models of networks that can be tuned through this middle ground: regular networks ‘rewired’ to introduce increasing amounts of disorder are explored, finding that these systems can be highly clustered, like regular lattices, yet have small characteristic path lengths, like random graphs.
Journal ArticleDOI

Equation of state calculations by fast computing machines

TL;DR: In this article, a modified Monte Carlo integration over configuration space is used to investigate the properties of a two-dimensional rigid-sphere system with a set of interacting individual molecules, and the results are compared to free volume equations of state and a four-term virial coefficient expansion.
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Emergence of Scaling in Random Networks

TL;DR: A model based on these two ingredients reproduces the observed stationary scale-free distributions, which indicates that the development of large networks is governed by robust self-organizing phenomena that go beyond the particulars of the individual systems.
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The meaning and use of the area under a receiver operating characteristic (ROC) curve.

James A. Hanley, +1 more
- 01 Apr 1982 - 
TL;DR: A representation and interpretation of the area under a receiver operating characteristic (ROC) curve obtained by the "rating" method, or by mathematical predictions based on patient characteristics, is presented and it is shown that in such a setting the area represents the probability that a randomly chosen diseased subject is (correctly) rated or ranked with greater suspicion than a random chosen non-diseased subject.
Journal ArticleDOI

Statistical mechanics of complex networks

TL;DR: In this paper, a simple model based on the power-law degree distribution of real networks was proposed, which was able to reproduce the power law degree distribution in real networks and to capture the evolution of networks, not just their static topology.