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Open AccessJournal ArticleDOI

Link prediction in complex networks: A survey

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TLDR
Recent progress about link prediction algorithms is summarized, emphasizing on the contributions from physical perspectives and approaches, such as the random-walk-based methods and the maximum likelihood methods.

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Book ChapterDOI

Link Prediction via Higher-Order Motif Features

TL;DR: This paper proposes a set of features that depend on the patterns or motifs that a pair of nodes occurs in, and experimentally demonstrates that using off-the-shelf classifiers with a well constructed classification dataset results in up to 10 percentage points increase in accuracy over prior topology-based and feature learning methods.
Journal ArticleDOI

Graph regularization weighted nonnegative matrix factorization for link prediction in weighted complex network

TL;DR: This model integrates two types of information: local topology and link weight information, and utilizes the weighted cosine similarity(WCS) method to calculate the weight similarity between local nodes and derives the multiplicative updating rules to learn the parameter of this model.
Journal ArticleDOI

Social Link Prediction in Online Social Tagging Systems

TL;DR: This article proposes latent topic models as a principled way of reducing the dimensionality of such data and capturing the dynamics of collaborative annotation process and proposes three generative processes to model latent user tastes with respect to resources they annotate with metadata.
Journal ArticleDOI

ASCOS++: An Asymmetric Similarity Measure for Weighted Networks to Address the Problem of SimRank

TL;DR: This article argues that SimRank and its families, such as P-Rank and SimRank++, fail to capture similar node pairs in certain conditions, and presents new similarity measures ASCOS and ASCOS++ to address the problem.
Journal ArticleDOI

Mining protein interactomes to improve their reliability and support the advancement of network medicine.

TL;DR: An important number of network mining tools is reviewed, together with resources from which reliable protein interactomes can be constructed, and a few representative examples of how molecular and clinical data can be integrated to deepen the understanding of pathogenesis are discussed.
References
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Journal ArticleDOI

Collective dynamics of small-world networks

TL;DR: Simple models of networks that can be tuned through this middle ground: regular networks ‘rewired’ to introduce increasing amounts of disorder are explored, finding that these systems can be highly clustered, like regular lattices, yet have small characteristic path lengths, like random graphs.
Journal ArticleDOI

Equation of state calculations by fast computing machines

TL;DR: In this article, a modified Monte Carlo integration over configuration space is used to investigate the properties of a two-dimensional rigid-sphere system with a set of interacting individual molecules, and the results are compared to free volume equations of state and a four-term virial coefficient expansion.
Journal ArticleDOI

Emergence of Scaling in Random Networks

TL;DR: A model based on these two ingredients reproduces the observed stationary scale-free distributions, which indicates that the development of large networks is governed by robust self-organizing phenomena that go beyond the particulars of the individual systems.
Journal ArticleDOI

The meaning and use of the area under a receiver operating characteristic (ROC) curve.

James A. Hanley, +1 more
- 01 Apr 1982 - 
TL;DR: A representation and interpretation of the area under a receiver operating characteristic (ROC) curve obtained by the "rating" method, or by mathematical predictions based on patient characteristics, is presented and it is shown that in such a setting the area represents the probability that a randomly chosen diseased subject is (correctly) rated or ranked with greater suspicion than a random chosen non-diseased subject.
Journal ArticleDOI

Statistical mechanics of complex networks

TL;DR: In this paper, a simple model based on the power-law degree distribution of real networks was proposed, which was able to reproduce the power law degree distribution in real networks and to capture the evolution of networks, not just their static topology.