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Journal ArticleDOI

Mechanism and Nature of Inhibition of Trypsin by Ligupurpuroside A, a Ku-Ding Tea Extract, Studied by Spectroscopic and Docking Methods

TLDR
Results from this study of the interaction of trypsin with its natural inhibitor should be useful to minimize the antinutritional effects and make full use of tea extracts in the food industry, and be also helpful to the design of the drugs for the diseases related to overexpression oftrypsin.
Abstract
Ligupurpuroside A is a glycoside extracted from Ku-Ding tea. As extracts from Ku-Ding tea exhibit anti-inflammatory property, we hypothesize that Ligupurpuroside A may be an active compound which inhibits trypsin activity during the anti-inflammatory process. The mechanism and nature of inhibition of trypsin by Ligupurpuroside A have been studied by multi-spectroscopic method, enzyme-activity assay and molecular docking. Enzyme activity assay reveals that Ligupurpuroside A significantly inhibits the activity of trypsin through a competitive manner with an IC50 value of 3.08 × 10−3 mol L−1. Fluorescence titration together with thermodynamic analysis indicate that a Ligupurpuroside A-trypsin complex is formed, and that hydrophobic force and hydrogen bonding are the main forces stabilizing the complex. UV-vis absorption, synchronous fluorescence and circular dichroism spectra show that the interaction between Ligupurpuroside A and trypsin induces conformational changes of trypsin with a decrease in the contents of α-helix and β-sheet. Finally, molecular docking further suggests that Ligupurpuroside A molecule binds within the active pocket of trypsin via hydrophobic force and hydrogen bond. Results from this study of the interaction of trypsin with its natural inhibitor should be useful to minimize the antinutritional effects and make full use of tea extracts in the food industry, and be also helpful to the design of the drugs for the diseases related to overexpression of trypsin.

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Citations
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Journal ArticleDOI

Inhibitory mechanism of two allosteric inhibitors, oleanolic acid and ursolic acid on α-glucosidase.

TL;DR: Docking results showed that oleanolic acid and ursolic acid bound in different allosteric sites of cavity 2 and cavity 4 on α-glucosidase, respectively, which triggeredAllosteric regulation to perturb conformational dynamics of α- glucosidease, eventually leading to a decrease of catalytic activity of the enzyme.
Journal ArticleDOI

Molecular mechanism of the interaction between resveratrol and trypsin via spectroscopy and molecular docking.

TL;DR: Results from this study would be useful in elucidating the molecular mechanisms of the interactions between resveratrol and trypsin and contribute to making full use of resver atrol in the food industry.
Journal ArticleDOI

Inhibitory kinetics and mechanism of rifampicin on α-glucosidase: Insights from spectroscopic and molecular docking analyses.

TL;DR: Rifampicin was confirmed as a novel α-glucosidase inhibitor and possibly contributed to the improvement of newfangled anti-diabetic agent.
Journal ArticleDOI

Binding mechanism of lipase to Ligupurpuroside B extracted from Ku-Ding tea as studied by multi-spectroscopic and molecular docking methods.

TL;DR: The interaction of lipase with Ligupurpuroside B was studied by multiple spectroscopic techniques, enzyme activity and molecular modeling under simulative physiological condition to give valuable information on the design of drugs with lipase as a carrier and should be useful for food industries.
Journal ArticleDOI

Molecular docking and muiltple spectroscopy investigation on the binding characteristics of aloe-emodin to pepsin

TL;DR: The binding characteristics of aloe-emodin and pepsin were investigated via multiple spectroscopic and molecular docking methods and the value of the stoichiometric binding number suggested only a single binding site on pepin for AE.
References
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Book

Principles of fluorescence spectroscopy

TL;DR: This book describes the fundamental aspects of fluorescence, the biochemical applications of this methodology, and the instrumentation used in fluorescence spectroscopy.
Journal ArticleDOI

Thermodynamics of protein association reactions: forces contributing to stability

Philip D. Ross, +1 more
- 26 May 1981 - 
TL;DR: On the basis of the thermochemical behavior of small molecule interactions, it is concluded that the strengthening of hydrogen bonds in the past decade, a complete thermodynamic description of the self-association of many proteins and their interactions is concluded.
Journal ArticleDOI

DICHROWEB: an interactive website for the analysis of protein secondary structure from circular dichroism spectra.

TL;DR: A user-friendly website for the analysis of protein secondary structures from Circular Dichroism (CD) and Synchrotron Radiation Circ circular DichROism (SRCD) spectra has been created.
Journal ArticleDOI

Fluorescence quenching and ligand binding: A critical discussion of a popular methodology

TL;DR: This review hopefully contributes to a re-appraisal of the published literature and to a more appropriate use of fluorescence quenching to study ligand binding.
Journal ArticleDOI

Characterizing the Interaction between Tartrazine and Two Serum Albumins by a Hybrid Spectroscopic Approach

TL;DR: The fluorescence data showed that tartrazine could bind to the two SAs to form a complex, and the binding process was a spontaneous molecular interaction procedure, in which van der Waals and hydrogen bond interactions played a major role.
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