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Journal ArticleDOI

Resolution of the early placental mammal radiation using Bayesian phylogenetics

TLDR
Crown-group Eutheria may have their most recent common ancestry in the Southern Hemisphere (Gondwana), and placental phylogeny is investigated using Bayesian and maximum-likelihood methods and a 16.4-kilobase molecular data set.
Abstract
Molecular phylogenetic studies have resolved placental mammals into four major groups, but have not established the full hierarchy of interordinal relationships, including the position of the root. The latter is critical for understanding the early biogeographic history of placentals. We investigated placental phylogeny using Bayesian and maximum-likelihood methods and a 16.4-kilobase molecular data set. Interordinal relationships are almost entirely resolved. The basal split is between Afrotheria and other placentals, at about 103 million years, and may be accounted for by the separation of South America and Africa in the Cretaceous. Crown-group Eutheria may have their most recent common ancestry in the Southern Hemisphere (Gondwana).

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Gliding Mammals: Taxonomy of Living and Extinct Species

TL;DR: The flying squirrels of the tribe Pteromyini within the rodent family Sciuridae represent the greatest diversity of gliding mammals, with a total of 48 species in 15 genera currently recognized, and occur throughout Asia, Europe, and North America.
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Locking Yourself Out: Diversity Among Dentally Zalambdodont Therian Mammals

TL;DR: With the important exception of golden moles and tenrecs, dentally zalambdodont taxa are less speciose than their nonzalambDodont sister taxa.
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Evolution of the tooth enamel microstructure in the earliest proboscideans (Mammalia)

TL;DR: Thealysed microstructures suggest that the enamel ancestral morphotype of paenungulates was primitive for euth-erian mammals, consisting in radial enamel, and illustrates an unexpected early diversity of the order in Africa.
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Self-imposed silence: parental antagonism and the evolution of X-chromosome inactivation.

TL;DR: In this paper, a model for the evolution of X-chromosome inactivation (XCI) is proposed, in which natural selection initially favors the silencing of paternally derived alleles of Xlinked demand inhibitors.
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The feline major histocompatibility complex is rearranged by an inversion with a breakpoint in the distal class I region.

TL;DR: The results not only confirmed that the p-arm of domestic cat B2 is inverted relative to human Chromosome 6, but also demonstrated that one inversion breakpoint localized to the distal segment of the MHC class I between TRIM39 and TRIM26.
References
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Journal ArticleDOI

MRBAYES: Bayesian inference of phylogenetic trees

TL;DR: The program MRBAYES performs Bayesian inference of phylogeny using a variant of Markov chain Monte Carlo, and an executable is available at http://brahms.rochester.edu/software.html.
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MODELTEST: testing the model of DNA substitution.

TL;DR: The program MODELTEST uses log likelihood scores to establish the model of DNA evolution that best fits the data.
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An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis

TL;DR: This work uses computer simulations and a laboratory-generated phylogeny to test bootstrapping results of parsimony analyses, and indicates that any given bootstrap proportion provides an unbiased but highly imprecise measure of repeatability, unless the actual probability of replicating the relevant result is nearly one.
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A molecular timescale for vertebrate evolution

TL;DR: The clock-like accumulation of sequence differences in some genes provides an alternative method by which the mean divergence time can be estimated, and the molecular times agree with most early and late fossil-based times, but indicate major gaps in the Mesozoic fossil record.
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Markov Chasin Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic Trees

TL;DR: The Bayesian framework for analyzing aligned nucleotide sequence data to reconstruct phylogenies, assess uncertainty in the reconstructions, and perform other statistical inferences is developed and a Markov chain Monte Carlo sampler is employed to sample trees and model parameter values from their joint posterior distribution.
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