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Simulating, analyzing, and animating dynamical systems : a guide to XPPAUT for researchers and students

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TLDR
A very brief tour of XPPAUT can be found in this paper, where the authors present a technique for writing ODE files for Differential Equations for differentially Equations.
Abstract
List of figures Preface 1. Installation 2 A Very Brief Tour of XPPAUT 3. Writing ODE Files for Differential Equations 4. XPPAUT in the Classroom 5. More Advanced Diffferential Equations 6. Spatial Problems, PDEs, and BVPs 7. Using AUTO. Bifurcation and Continuation 8. Animation 9 Tricks and Advanced Methods Appendix A. Colors and Linestyles Appendix B. The Options Appendix C. Numerical Methods Appendix D. Structure of ODE Files Appendix E. Complete Command List Appendix F. Error Messages Appendix G. Cheat Sheet References IndexAppendix C. Numerical Methods Appendix D. Structure of ODE Files Appendix E. Complete Command List Appendix F. Error Messages Appendix G. Cheat Sheet References Index.

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