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The bayes net toolbox for matlab

K. Murphy
- Vol. 33
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TLDR
A broad spectrum of issues related to graphical models (directed and undirected) are discussed, and how BNT was designed to cope with them all are described, at a high-level.
Abstract
The Bayes Net Toolbox (BNT) is an open-source Matlab package for directed graphical models. BNT supports many kinds of nodes (probability distributions), exact and approximate inference, parameter and structure learning, and static and dynamic models. BNT is widely used in teaching and research: the web page has received over 28,000 hits since May 2000. In this paper, we discuss a broad spectrum of issues related to graphical models (directed and undirected), and describe, at a high-level, how BNT was designed to cope with them all. We also compare BNT to other software packages for graphical models, and discuss the nascent OpenBayes e ort.

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Citations
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Dynamic bayesian networks: representation, inference and learning

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SATzilla: portfolio-based algorithm selection for SAT

TL;DR: SATzilla is described, an automated approach for constructing per-instance algorithm portfolios for SAT that use so-called empirical hardness models to choose among their constituent solvers and is improved by integrating local search solvers as candidate solvers, by predicting performance score instead of runtime, and by using hierarchical hardness models that take into account different types of SAT instances.
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How to infer gene networks from expression profiles

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Depth and Appearance for Mobile Scene Analysis

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References
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MonographDOI

Causality: models, reasoning, and inference

TL;DR: The art and science of cause and effect have been studied in the social sciences for a long time as mentioned in this paper, see, e.g., the theory of inferred causation, causal diagrams and the identification of causal effects.
Journal ArticleDOI

Factor graphs and the sum-product algorithm

TL;DR: A generic message-passing algorithm, the sum-product algorithm, that operates in a factor graph, that computes-either exactly or approximately-various marginal functions derived from the global function.
Book

Causation, prediction, and search

TL;DR: The authors axiomatize the connection between causal structure and probabilistic independence, explore several varieties of causal indistinguishability, formulate a theory of manipulation, and develop asymptotically reliable procedures for searching over equivalence classes of causal models.