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Journal ArticleDOI

The neglected functions of intrinsically disordered proteins and the origin of life.

Laurent Jaeken
- 01 Jul 2017 - 
- Vol. 126, pp 31-46
TLDR
Ling's theory is a complete quantitative theory with corroborated equations for solute distribution, transport, cell potentials and osmotic behaviour and describing the cell's energy cycle and IDP's are involved in all this.
Abstract
The example of gelatine shows that extended proteins behave quite differently than globular ones: with water they form a gel. Historically the colloid view of protoplasm was discredited in favour of membrane-(pump)-theory (MPT), but unjustified. In his association-induction hypothesis Ling demonstrates that MPT is full of contradictions and that the colloid view has to be re-considered. In that case IDP's play a crucial role in this. What Ling calls the ‘living state’ consists of the unitary protoplasmic structure from which it was experimentally demonstrated that it can survive and keep Na+ and K+ concentrations without a delineating membrane. It consists of unfolded polypeptide chains whereby the repetitive backbone peptide groups orient and polarise many layers of water, in which Na+ and other solutes have reduced solubility and whereby the polypeptide β- and ϒ-carboxyl-groups adsorb K+. This ‘associated’ state is the resting state: a coherent high-energy low-entropy meta-stable state. It can be kept by adsorbed ATP (NTP) eventually for years without consumption of ATP as demonstrated by Clegg on Artemia embryo's. Stimuli can transform this state into a lower-energy higher-entropy action state with dissociation of ADP and Pi and newly synthesised ATP can reinstall it. Rest-to-action and action-to-rest were shown to be real phase-shifts. Ling's theory is a complete quantitative theory with corroborated equations for solute distribution, transport, cell potentials and osmotic behaviour and describing the cell's energy cycle. IDP's are involved in all this. The new view on IDP's leads to new insights on the origin of life.

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Citations
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Journal ArticleDOI

Cell-Inspired All-Aqueous Microfluidics: From Intracellular Liquid–Liquid Phase Separation toward Advanced Biomaterials

TL;DR: An emerging all‐aqueous microfluidic technology derived from micrometer‐scaled manipulation of LLPS is presented and enables the state‐of‐art design of advanced biomaterials with exquisite structural proficiency and diversified biological functions.
Journal ArticleDOI

Intrinsically Disordered Proteins: The Dark Horse of the Dark Proteome.

TL;DR: The emerging picture suggests that despite being major constituents of the dark matter, IDPs may be the dark horse in the protein universe.
Journal ArticleDOI

Intrinsically Disordered Proteins: Critical Components of the Wetware.

TL;DR: This focused Review discusses how IDPs, as critical components of the wetware, influence cell-fate decisions by wiring protein interaction networks to keep them minimally frustrated and explores the possibility that they can be modeled as attractors.
Journal ArticleDOI

Cell theory, intrinsically disordered proteins, and the physics of the origin of life.

TL;DR: The evidence is given that the first protocells may have been formed on the basis of intrinsically disordered peptides, and available data on the similarity of the physical properties of cell models and living cells allow the Virchow's postulate to be rephrase as follows.
Journal ArticleDOI

Effect of macromolecular crowding on the kinetics of glycolytic enzymes and the behaviour of glycolysis in yeast

TL;DR: The results support the view that the extent of intracellular water dipolar relaxation is regulated by the ability of cytoplasmic proteins to polarize intrACEllular water with the assistance of ATP, as suggested in the Association-Induction (AI) hypothesis.
References
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A revolution in the physiology of the living cell

TL;DR: This book examines this revolution in cell physiology which has successfully withstood 25 years of world-wide testing and has already generated magnetic resonance imaging (MRI).
Journal ArticleDOI

The energy coupled exchange of Na+ for K+ across the cell membrane: The Na+,K+-pump

J.C. Skou
- 01 Aug 1990 - 
TL;DR: In a response to Kroghs criticism in his Croonian Lecture of Conway's view, Conway replied in a paper in Nature in 1946: ‘Krogh... considers the apparent impermeability to sodium as due to an active extrusion, sodium ions entering the fibers as fast, if indeed not faster than potassium ions.
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Life at the Cell and Below-Cell Level: The Hidden History of a Fundamental Revolution in Biology

TL;DR: The induction hypothesis known as Ling's Fixed YES, in essence, is known to only a few, unbelieva opaqueness and to reveal the shining tru and publicizing this volume, in which the hypothesis and its key supportive evidence make up fi view of the entire history of Mankind's sear the most basic level.
Journal ArticleDOI

Rethinking gene regulatory networks in light of alternative splicing, intrinsically disordered protein domains, and post-translational modifications.

TL;DR: Evidence shows that AS, IDP, and PTM complicate gene expression and act synergistically to facilitate and promote time- and cell-specific protein modifications involved in cell signaling and cell fate specification and thereby disrupt a strict deterministic GRN-phenotype mapping.
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