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Open AccessJournal ArticleDOI

The phylogenetic distribution of ultraviolet sensitivity in birds

TLDR
It is shown that avian colour vision shifted between VS and UVS at least 14 times, and single nucleotide substitutions can explain all these shifts.
Abstract
Colour vision in birds can be categorized into two classes, the ultraviolet (UVS) and violet sensitive (VS) Their phylogenetic distributions have traditionally been regarded as highly conserved However, the complicated nature of acquiring spectral sensitivities from cone photoreceptors meant that until recently, only a few species had actually been studied Whether birds are UVS or VS can nowadays be inferred from a wide range of species via genomic sequencing of the UV/violet SWS1 cone opsin gene We present genomic sequencing results of the SWS1 gene from 21 avian orders Amino acid residues signifying UV sensitivity are found in the two most important spectral tuning sites 86 and 90 of Pteroclidiformes and Coraciiformes, in addition to the major clades, Palaeognathae, Charadriiformes, Trogoniformes, Psittaciformes and Passeriformes, where they where previously known to occur We confirm that the presumed UVS-conferring amino acid combination F86, C90 and M93 is common to Palaeognathae and unique to this clade, despite available spectrometric evidence showing the ostrich retina to be VS By mapping our results together with data from previous studies on a molecular phylogeny we show that avian colour vision shifted between VS and UVS at least 14 times Single nucleotide substitutions can explain all these shifts The common ancestor of birds most likely had a VS phenotype However, the ancestral state of the avian SWS1 opsin’s spectral tuning sites cannot be resolved, since the Palaeognathae are F86, C90 while the Neognathae are ancestrally S86, S90 The phylogenetic distribution of UVS and VS colour vision in birds is so complex that inferences of spectral sensitivities from closely related taxa should be used with caution

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Journal ArticleDOI

Frugivory and seed dispersal by vertebrates in tropical and subtropical Asia: An update

TL;DR: Previous evidence for the importance of hornbills, bulbuls, elephants, gibbons, civets, and fruit bats in seed dispersal is reinforced, and it is suggested that the roles of green pigeons, macaques, rodents, bears, and deer were previously underestimated.
Journal ArticleDOI

Camouflage predicts survival in ground-nesting birds

TL;DR: It is shown for the first time in a natural system, that survival probability of wild animals is directly related to their level of camouflage as perceived by the visual systems of their main predators.
Journal ArticleDOI

Photoreception and vision in the ultraviolet

TL;DR: A review of the history of research on biological UV photosensitivity and current major research trends in this field can be found in this article, where the authors discuss the role of UV in vision, from guiding navigation and orientation behavior to detecting food and potential predators, to supporting high-level tasks such as mate assessment and intraspecific communication.
Journal ArticleDOI

Immune genes are hotspots of shared positive selection across birds and mammals.

TL;DR: The results suggest that pathogens, particularly viruses, consistently target the same genes across divergent clades, and that these genes are hotspots of host-pathogen conflict over deep evolutionary time.
Journal ArticleDOI

Ultraviolet vision in birds: the importance of transparent eye media

TL;DR: It is hypothesized that the precise spectral tuning of the ocular media is mostly relevant for detecting weak UV signals, e.g. in dim hollow-nests of passerines and parrots.
References
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Book ChapterDOI

Primer3 on the WWW for general users and for biologist programmers.

TL;DR: This chapter assumes acquaintance with the principles and practice of PCR, as outlined in, for example, refs.
Journal ArticleDOI

A Phylogenomic Study of Birds Reveals Their Evolutionary History

TL;DR: This study examined ∼32 kilobases of aligned nuclear DNA sequences from 19 independent loci for 169 species, representing all major extant groups, and recovered a robust phylogeny from a genome-wide signal supported by multiple analytical methods.
Book

The Ecology of vision

J. N. Lythgoe
Journal ArticleDOI

Receptor noise as a determinant of colour thresholds.

TL;DR: Spectral sensitivities, measured under bright conditions, for di–, tri–, and tetrachromatic eyes from a range of animals can be modelled by assuming that thresholds are set by colour opponency mechanisms whose performance is limited by photoreceptor noise, the achromatic signal being disregarded.
Journal ArticleDOI

Isolation, sequence analysis, and intron-exon arrangement of the gene encoding bovine rhodopsin

TL;DR: Nucleotide sequence analysis of the cloned DNAs has yielded a complete amino acid sequence for bovine rhodopsin and provided an intron-exon map of its gene.
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