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Timothy B. Sackton
Researcher at Harvard University
Publications - 78
Citations - 7704
Timothy B. Sackton is an academic researcher from Harvard University. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 29, co-authored 71 publications receiving 6706 citations. Previous affiliations of Timothy B. Sackton include Brown University & Cornell University.
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Journal ArticleDOI
Evolution of genes and genomes on the Drosophila phylogeny.
Andrew G. Clark,Michael B. Eisen,Michael B. Eisen,Douglas Smith,Casey M. Bergman,Brian Oliver,Therese A. Markow,Thomas C. Kaufman,Manolis Kellis,Manolis Kellis,William M. Gelbart,Venky N. Iyer,Daniel A. Pollard,Timothy B. Sackton,Amanda M. Larracuente,Nadia D. Singh,José P. Abad,Dawn N. Abt,Boris Adryan,Montserrat Aguadé,Hiroshi Akashi,Wyatt W. Anderson,Charles F. Aquadro,David H. Ardell,Roman Arguello,Carlo G. Artieri,Daniel A. Barbash,Daniel Barker,Paolo Barsanti,Phil Batterham,Serafim Batzoglou,Dave Begun,Arjun Bhutkar,Arjun Bhutkar,Enrico Blanco,Stephanie Bosak,Robert K. Bradley,Adrianne Brand,Michael R. Brent,Angela N. Brooks,Randall H. Brown,Roger K. Butlin,Corrado Caggese,Brian R. Calvi,A. Bernardo Carvalho,Anat Caspi,Sergio Castrezana,Susan E. Celniker,Jean L. Chang,Charles Chapple,Sourav Chatterji,Sourav Chatterji,Asif T. Chinwalla,Alberto Civetta,Sandra W. Clifton,Josep M. Comeron,James C. Costello,Jerry A. Coyne,Jennifer Daub,Robert David,Arthur L. Delcher,Kim D. Delehaunty,Chuong B. Do,Heather Ebling,Kevin A. Edwards,Thomas H. Eickbush,Jay D. Evans,Alan Filipski,Sven Findeiß,Sven Findeiß,Eva Freyhult,Lucinda Fulton,Robert S. Fulton,Ana Cristina Lauer Garcia,Anastasia Gardiner,David A. Garfield,Barry E. Garvin,Greg Gibson,Don Gilbert,Sante Gnerre,Jennifer Godfrey,Robert T. Good,Valer Gotea,Brenton Gravely,Anthony J. Greenberg,Sam Griffiths-Jones,Sam Griffiths-Jones,Samuel R. Gross,Roderic Guigó,Erik Gustafson,Wilfried Haerty,Matthew W. Hahn,Daniel L. Halligan,Aaron L. Halpern,Gillian M. Halter,Mira V. Han,Andreas Heger,LaDeana W. Hillier,Angie S. Hinrichs,Ian Holmes,Roger A. Hoskins,Melissa J. Hubisz,Dan Hultmark,Melanie A. Huntley,David B. Jaffe,Santosh Jagadeeshan,William R. Jeck,Justin Johnson,Corbin D. Jones,William C. Jordan,Gary H. Karpen,Gary H. Karpen,Eiko Kataoka,Peter D. Keightley,Pouya Kheradpour,Ewen F. Kirkness,Leonardo Koerich,Karsten Kristiansen,Dave Kudrna,Rob J. Kulathinal,Sudhir Kumar,Roberta Kwok,Eric S. Lander,Charles H. Langley,Richard T. Lapoint,Brian P. Lazzaro,So Jeong Lee,Lisa Levesque,Ruiqiang Li,Ruiqiang Li,Chiao-Feng Lin,Michael F. Lin,Michael F. Lin,Kerstin Lindblad-Toh,Ana Llopart,Manyuan Long,Lloyd Low,Elena R. Lozovsky,Jian Lu,Meizhong Luo,Carlos A. Machado,Wojciech Makalowski,Mar Marzo,Muneo Matsuda,Luciano M. Matzkin,Bryant F. McAllister,Carolyn S. McBride,Brendan McKernan,Kevin McKernan,Maria Mendez-Lago,Patrick Minx,Michael U. Mollenhauer,Kristi L. Montooth,Stephen M. Mount,Xu Mu,Eugene W. Myers,Bárbara Negre,Stuart J. Newfeld,Rasmus Nielsen,Mohamed A. F. Noor,Patrick M. O’Grady,Lior Pachter,Montserrat Papaceit,Matthew J. Parisi,Michael Parisi,Leopold Parts,Jakob Skou Pedersen,Jakob Skou Pedersen,Graziano Pesole,Adam M. Phillippy,Chris P. Ponting,Mihai Pop,Damiano Porcelli,Jeffrey R. Powell,Sonja J. Prohaska,Kim D. Pruitt,Marta Sabariego Puig,Hadi Quesneville,Kristipati Ravi Ram,David M. Rand,Matthew D. Rasmussen,Laura K. Reed,Robert A. Reenan,Amy Denise Reily,Karin A. Remington,Tania Tassinari Rieger,Michael G. Ritchie,Charles Robin,Yu-Hui Rogers,Claudia Rohde,Julio Rozas,Marc Rubenfield,Alfredo Ruiz,Susan M. Russo,Steven L. Salzberg,Alejandro Sánchez-Gracia,Alejandro Sánchez-Gracia,David J. Saranga,Hajime Sato,Stephen W. Schaeffer,Michael C. Schatz,Todd A. Schlenke,Russell Schwartz,Carmen Segarra,Rama S. Singh,Laura K. Sirot,Marina Sirota,Nicholas Sisneros,Christopher D. Smith,Christopher D. Smith,Temple F. Smith,John Spieth,Deborah E. Stage,Alexander Stark,Alexander Stark,Wolfgang Stephan,Robert L. Strausberg,Sebastian Strempel,David Sturgill,Granger G. Sutton,Granger G. Sutton,Wei Tao,Sarah A. Teichmann,Yoshiko N. Tobari,Yoshihiko Tomimura,Jason M. Tsolas,Vera L. S. Valente,Eli Venter,J. Craig Venter,Saverio Vicario,Filipe G. Vieira,Albert J. Vilella,Alfredo Villasante,Brian P. Walenz,Jun Wang,Jun Wang,Marvin Wasserman,Thomas D. Watts,Derek Wilson,Richard K. Wilson,Rod A. Wing,Mariana F. Wolfner,Alex Wong,Gane Ka-Shu Wong,Gane Ka-Shu Wong,Chung-I Wu,Gabriel C. Wu,Daisuke Yamamoto,Hsiao Pei Yang,Shiaw Pyng Yang,James A. Yorke,Kiyohito Yoshida,Evgeny M. Zdobnov,Peili Zhang,Yu Zhang,Aleksey V. Zimin,Jennifer Baldwin,Amr Abdouelleil,Jamal Abdulkadir,Adal Abebe,Brikti Abera,Justin Abreu,St Christophe Acer,Lynne Aftuck,Allen Alexander,Peter An,Erica Anderson,Scott Anderson,Harindra Arachi,Marc Azer,Pasang Bachantsang,Andrew Barry,Tashi Bayul,Aaron M. Berlin,Daniel Bessette,Toby Bloom,Jason Blye,Leonid Boguslavskiy,Claude Bonnet,Boris Boukhgalter,Imane Bourzgui,Adam Brown,Patrick Cahill,Sheridon Channer,Yama Cheshatsang,Lisa Chuda,Mieke Citroen,Alville Collymore,Patrick Cooke,Maura Costello,Katie D'Aco,Riza M. Daza,Georgius De Haan,Stuart DeGray,Christina Demaso,Norbu Dhargay,Kimberly Dooley,Erin E. Dooley,Missole Doricent,Passang Dorje,Kunsang Dorjee,Alan Dupes,Richard Elong,Jill Falk,Abderrahim Farina,Susan Faro,Diallo Ferguson,Sheila Fisher,Chelsea D. Foley,Alicia Franke,Dennis C. Friedrich,Loryn Gadbois,Gary Gearin,Christina R. Gearin,Georgia Giannoukos,Tina Goode,Joseph Graham,Edward Grandbois,Sharleen Grewal,Kunsang Gyaltsen,Nabil Hafez,Birhane Hagos,Jennifer L. Hall,Charlotte Henson,Andrew Hollinger,Tracey Honan,Monika D. Huard,Leanne Hughes,Brian Hurhula,M. Erii Husby,Asha Kamat,Ben Kanga,Seva Kashin,Dmitry Khazanovich,Peter Kisner,Krista Lance,Marcia Lara,William Lee,Niall J. Lennon,Frances Letendre,Rosie Levine,Alex Lipovsky,Xiaohong Liu,Jinlei Liu,Shangtao Liu,Tashi Lokyitsang,Yeshi Lokyitsang,Rakela Lubonja,Annie Lui,Pen MacDonald,Vasilia Magnisalis,Kebede Maru,Charles Matthews,William McCusker,Susan McDonough,Teena Mehta,James Meldrim,Louis Meneus,Oana Mihai,Atanas Mihalev,Tanya Mihova,Rachel Mittelman,Valentine Mlenga,Anna Montmayeur,Leonidas Mulrain,Adam Navidi,Jerome Naylor,Tamrat Negash,Thu Nguyen,Nga Nguyen,Robert Nicol,Choe Norbu,Nyima Norbu,Nathaniel Novod,Barry O'Neill,Sahal Osman,Eva Markiewicz,Otero L. Oyono,Christopher Patti,Pema Phunkhang,Fritz Pierre,Margaret Priest,Sujaa Raghuraman,Filip Rege,Rebecca Reyes,Cecil Rise,Peter Rogov,Keenan Ross,Elizabeth P. Ryan,Sampath Settipalli,Terry Shea,Ngawang Sherpa,Lu Shi,Diana Shih,Todd Sparrow,Jessica Spaulding,John Stalker,Nicole Stange-Thomann,Sharon Stavropoulos,Catherine Stone,Christopher Strader,Senait Tesfaye,Talene Thomson,Yama Thoulutsang,Dawa Thoulutsang,Kerri Topham,Ira Topping,Tsamla Tsamla,Helen Vassiliev,Andy Vo,Tsering Wangchuk,Tsering Wangdi,Michael Weiand,Jane Wilkinson,Adam Wilson,Shailendra Yadav,Geneva Young,Qing Yu,Lisa Zembek,Danni Zhong,Andrew Zimmer,Zac Zwirko,Pablo Alvarez,William Brockman,Jonathan Butler,Cheewhye Chin,Manfred Grabherr,Michael Kleber,Evan Mauceli,Iain MacCallum +429 more
TL;DR: These genome sequences augment the formidable genetic tools that have made Drosophila melanogaster a pre-eminent model for animal genetics, and will further catalyse fundamental research on mechanisms of development, cell biology, genetics, disease, neurobiology, behaviour, physiology and evolution.
Journal ArticleDOI
A Scan for Positively Selected Genes in the Genomes of Humans and Chimpanzees
Rasmus Nielsen,Rasmus Nielsen,Carlos Bustamante,Andrew G. Clark,Stephen Glanowski,Timothy B. Sackton,Melissa J. Hubisz,Adi Fledel-Alon,David M. Tanenbaum,Daniel Civello,Thomas J. White,John J. Sninsky,Mark Raymond Adams,Michele Cargill +13 more
TL;DR: This work compares 13,731 annotated genes from humans to their chimpanzee orthologs to identify genes that show evidence of positive selection, and hypothesizes that positive selection in some of these genes may be driven by genomic conflict due to apoptosis during spermatogenesis.
Journal ArticleDOI
Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.
John H. Werren,Stephen Richards,Christopher A. Desjardins,Oliver Niehuis,Jürgen Gadau,John K. Colbourne,Leo W. Beukeboom,Claude Desplan,Christine G. Elsik,Cornelis J. P. Grimmelikhuijzen,Paul Kitts,Jeremy A. Lynch,Terence Murphy,Deodoro C. S. G. Oliveira,Christopher D. Smith,Christopher D. Smith,Louis De Van Zande,Kim C. Worley,Evgeny M. Zdobnov,Maarten Aerts,Stefan Albert,Víctor Hugo Anaya,Juan Manuel Anzola,Angel Roberto Barchuk,Susanta K. Behura,Agata N. Bera,May R. Berenbaum,Rinaldo C. Bertossa,Márcia Maria Gentile Bitondi,Seth R. Bordenstein,Peer Bork,Erich Bornberg-Bauer,Marleen Brunain,Giuseppe Cazzamali,Lesley S. Chaboub,Joseph Chacko,Dean Chavez,Christopher P. Childers,Jeong Hyeon Choi,Michael E. Clark,Charles Claudianos,Rochelle A. Clinton,Andrew Cree,Alexandre S. Cristino,Alexandre S. Cristino,Phat M. Dang,Alistair C. Darby,Dirk C. de Graaf,Bart Devreese,Huyen Dinh,Rachel Edwards,Navin Elango,Eran Elhaik,Olga Ermolaeva,Jay D. Evans,Sylvain Forêt,Gerald R. Fowler,Daniel Gerlach,Joshua D. Gibson,Donald G. Gilbert,Dan Graur,Stefan Gründer,Darren E. Hagen,Yi Han,Frank Hauser,Da Hultmark,Henry C. Hunter,Gregory D. D. Hurst,Shalini N. Jhangian,Huaiyang Jiang,Reed M. Johnson,Andrew K. Jones,Thomas Junier,Tatsuhiko Kadowaki,A. Kamping,Yuri Kapustin,Bobak D. Kechavarzi,Jaebum Kim,Jay Kim,Boris Kiryutin,T. Koevoets,Christie Kovar,Evgenia V. Kriventseva,Robert Kucharski,Heewook Lee,Sandra L. Lee,Kristin Lees,Lora Lewis,David W. Loehlin,John M. Logsdon,Jacqueline Lopez,Ryan J. Lozado,Donna Maglott,Ryszard Maleszka,Anoop Mayampurath,Danielle J. Mazur,Marcella A. McClure,Andrew D. Moore,Margaret Morgan,Jean Muller,Monica Munoz-Torres,Donna M. Muzny,Lynne V. Nazareth,Susanne Neupert,Ngoc Nguyen,Francis M. F. Nunes,John G. Oakeshott,Geoffrey Okwuonu,Bart A. Pannebakker,Vikas Pejaver,Zuogang Peng,Stephen C. Pratt,Reinhard Predel,Ling Ling Pu,Hilary Ranson,Rhitoban Raychoudhury,Andreas Rechtsteiner,Andreas Rechtsteiner,Justin T. Reese,Jeffrey G. Reid,Megan Riddle,I. I. Hugh M Robertson,Jeanne Romero-Severson,Miriam I. Rosenberg,Timothy B. Sackton,David B. Sattelle,Helge Schlüns,Thomas Schmitt,Martina Schneider,Andreas Schüler,Andrew M. Schurko,David M. Shuker,Zilá Luz Paulino Simões,Saurabh Sinha,Zachary Smith,Victor V. Solovyev,Alexandre Souvorov,Andreas Springauf,Elisabeth Stafflinger,Deborah E. Stage,Deborah E. Stage,Mario Stanke,Yoshiaki Tanaka,Arndt Telschow,Carol Trent Selina Vattathil,I. I. Eveline C Verhulst,Lumi Viljakainen,Kevin W. Wanner,Robert M. Waterhouse,James B. Whitfield,Timothy E. Wilkes,Michael Williamson,Judith H. Willis,Florian Wolschin,Stefan Wyder,Stefan Wyder,Takuji Yamada,Soojin V. Yi,Courtney N. Zecher,Lan Zhang,Lan Zhang,Richard A. Gibbs +161 more
TL;DR: Key findings include the identification of a functional DNA methylation tool kit; hymenopteran-specific genes including diverse venoms; lateral gene transfers among Pox viruses, Wolbachia, and Nasonia; and the rapid evolution of genes involved in nuclear-mitochondrial interactions that are implicated in speciation.
Journal ArticleDOI
Dynamic Evolution of the Innate Immune System in Drosophila
Timothy B. Sackton,Brian P. Lazzaro,Todd A. Schlenke,Jay D. Evans,Dan Hultmark,Andrew G. Clark +5 more
TL;DR: Using codon-based likelihood methods, it is shown that immune-system genes, and especially those encoding recognition proteins, evolve under positive darwinian selection, suggesting that molecular interactions between hosts and pathogens may drive adaptive evolution in the Drosophila immune system.
Journal ArticleDOI
Evolution of protein-coding genes in Drosophila
Amanda M. Larracuente,Timothy B. Sackton,Anthony J. Greenberg,Alex Wong,Nadia D. Singh,David Sturgill,Yu Zhang,Brian Oliver,Andrew G. Clark +8 more
TL;DR: It is confirmed the importance of translational selection in shaping protein evolution in Drosophila and show that factors such as tissue bias in expression, gene essentiality, intron number, and recombination rate also contribute to evolutionary rate variation among proteins.