How to analyze RNA Seq data with Python?
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47 Citations | Our software provides tools to better understand error profiles in RNA-Seq data and improve inference from this new technology. |
| Our pipeline facilitates the comprehensive and efficient analysis of private and public RNA-seq data. | |
| The results on simulation and real RNA-Seq data demonstrate that our method is effective and suitable for analyzing these data. | |
37 Citations | With this tool, biologists can easily perform most of the analyses on their computer for their RNA-Seq data, from the mapped data to the discovery of important loci. |
61 Citations | It is a useful method designed for comparing two groups of RNA-seq samples. |
69 Citations | Applying the protocol described here and using the provided data sets represent a useful first step toward building RNA-Seq data analysis expertise in a research group. |
| We have evaluated different algorithms available for the analysis of RNA-seq and proposed a novel approach--NOISeq--that differs from existing methods in that it is data-adaptive and nonparametric. | |
18 Citations | The selection of bioinformatic software tools for RNA-seq data analysis can maximize quality parameters on de novo assemblies and availability of reads in downstream analysis. |
Open access•Posted Content | We present a novel approach to RNA-Seq quantification that is near optimal in speed and accuracy. |
23 Citations | This highlights an important layer of variation that remains undetected by current protocols for RNA-seq analysis. |
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