Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

Soil Chemical Analysis

We redescribe the only previously known species of Myrsidea from bulbuls, M. pycnonoti Eichler. Sixteen new species are described; they and their type hosts are: M. phillipsi ex Pycnonotus goiavier goiavier (Scopoli), M. gieferi ex P. goiavier suluensis Mearns, M. kulpai ex P. flavescens Blyth, M. finlaysoni ex P. finlaysoni Strickland, M. kathleenae ex P. cafer (L.), M. warwicki ex Ixos philippinus (J. R. Forster), M. mcclurei ex Microscelis amaurotis (Temminck), M. zeylanici ex P. zeylanicus (Gmelin), M. plumosi ex P. plumosus Blyth, M. eutiloti ex P. eutilotus (Jardine and Selby), M. adamsae ex P. urostictus (Salvadori), M. ochracei ex Criniger ochraceus F. Moore, M. borbonici ex Hypsipetes borbonicus (J. R. Forster), M. johnsoni ex P. atriceps (Temminck), M. palmai ex C. ochraceus, and M. claytoni ex P. eutilotus. A key is provided for the identification of these 17 species.

A new species

: The unpolarized absorption and circular dichroism spectra of the fundamental vibrational transitions of the chiral molecule, 4-methyl-2-oxetanone, are calculated ab initio. Harmonic force fields are obtained using Density Functional Theory (DFT), MP2, and SCF methodologies and a 5S4P2D/3S2P (TZ2P) basis set. DFT calculations use the Local Spin Density Approximation (LSDA), BLYP, and Becke3LYP (B3LYP) density functionals. Mid-IR spectra predicted using LSDA, BLYP, and B3LYP force fields are of significantly different quality, the B3LYP force field yielding spectra in clearly superior, and overall excellent, agreement with experiment. The MP2 force field yields spectra in slightly worse agreement with experiment than the B3LYP force field. The SCF force field yields spectra in poor agreement with experiment.The basis set dependence of B3LYP force fields is also explored: the 6-31G* and TZ2P basis sets give very similar results while the 3-21G basis set yields spectra in substantially worse agreements with experiment. jg

Ab initio calculation of vibrational absorption and circular dichroism spectra using density functional force fields

Fusarium species, particularly Fusarium graminearum and F. culmorum, are the main cause of trichothecene type B contamination in cereals. Data on the distribution of Fusarium trichothecene genotypes in cereals in Europe are scattered in time and space. Furthermore, a common core set of related variables (sampling method, host cultivar, previous crop, etc.) that would allow more effective analysis of factors influencing the spatial and temporal population distribution, is lacking. Consequently, based on the available data, it is difficult to identify factors influencing chemotype distribution and spread at the European level. Here we describe the results of a collaborative integrated work which aims (1) to characterize the trichothecene genotypes of strains from three Fusarium species, collected over the period 2000–2013 and (2) to enhance the standardization of epidemiological data collection. Information on host plant, country of origin, sampling location, year of sampling and previous crop of 1147 F. graminearum, 479 F. culmorum, and 3 F. cortaderiae strains obtained from 17 European countries was compiled and a map of trichothecene type B genotype distribution was plotted for each species. All information on the strains was collected in a freely accessible and updatable database (www.catalogueeu.luxmcc.lu), which will serve as a starting point for epidemiological analysis of potential spatial and temporal trichothecene genotype shifts in Europe. The analysis of the currently available European dataset showed that in F. graminearum, the predominant genotype was 15-acetyldeoxynivalenol (15-ADON) (82.9%), followed by 3-acetyldeoxynivalenol (3-ADON) (13.6%), and nivalenol (NIV) (3.5%). In F. culmorum, the prevalent genotype was 3-ADON (59.9%), while the NIV genotype accounted for the remaining 40.1%. Both, geographical and temporal patterns of trichothecene genotypes distribution were identified.

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A European Database of Fusarium graminearum and F. culmorum Trichothecene Genotypes

Microsatellite-primed PCR characterization of hydrocarbon-degrading fungi isolated from two oily seeds.

Abstract This study introduces two new marine microfungal species, Paraloratospora marina (Phaeosphaeriaceae) and Tremateia phragmitis (Didymosphaeriaceae) based on morphological comparisons and multi-gene phylogenetic analyses. They were collected on decaying woody stems of Phragmites australis at Cardiff Bay Nature Reserve in Wales, United Kingdom. Paraloratospora marina sp. nov. is characterized by immersed, globose to subglobose ascomata with a papillate and periphysate ostiole, cylindrical to subcylindrical, thick-walled, sessile to subsessile asci, fusiform, hyaline to pale brown, 3-septate, guttulate ascospores. Tremateia phragmitis sp. nov. is characterized by semi-immersed to immersed, globose ascomata with a protruding periphysate ostiole, clavate, pedicellate, asci and ascospores that are ellipsoidal to broadly fusiform, 4–6 transversely septate, with 1–2 vertical septa, muriform, golden brown to pale brown ascospores. Dichotomopilus funicola and Pseudofusicoccum ardesiacum are recorded for the first time from marine habitats. Furthermore, based on morphological characteristics and multigene phylogenetic analyses, Phaeosphaeria spartinae was transferred to Septoriella.

Characterization of novel estuarine Ascomycota based on taxonomic and phylogenetic evaluation

Biology retracts the article "Advantage of Species Diversification to Facilitate Sustainable Development of Aquaculture Sector" cited above [...].

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Ali H. Bahkali

Papers

Microsatellite-primed PCR characterization of hydrocarbon-degrading fungi isolated from two oily seeds.

Characterization of novel estuarine Ascomycota based on taxonomic and phylogenetic evaluation

Retraction: Kim et al. Advantage of Species Diversification to Facilitate Sustainable Development of Aquaculture Sector. Biology 2022, 11, 368