A
Andrei Shkeda
Researcher at National Institutes of Health
Publications - 3
Citations - 5210
Andrei Shkeda is an academic researcher from National Institutes of Health. The author has contributed to research in topics: Reference genome & Molecular Sequence Annotation. The author has an hindex of 3, co-authored 3 publications receiving 3898 citations. Previous affiliations of Andrei Shkeda include University of California, Santa Cruz.
Papers
More filters
Journal ArticleDOI
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary,Mathew W. Wright,J. Rodney Brister,Stacy Ciufo,Diana Haddad,Richard McVeigh,Bhanu Rajput,Barbara Robbertse,Brian Smith-White,Danso Ako-adjei,Alexander Astashyn,Azat Badretdin,Yiming Bao,Olga Blinkova,Vyacheslav Brover,Vyacheslav Chetvernin,Jinna Choi,Eric Cox,Olga Ermolaeva,Catherine M. Farrell,Tamara Goldfarb,Tripti Gupta,Daniel H. Haft,Eneida L. Hatcher,Wratko Hlavina,Vinita Joardar,Vamsi K. Kodali,Wenjun Li,Donna Maglott,Patrick Masterson,Kelly M. McGarvey,Michael R. Murphy,Kathleen O'Neill,Shashikant Pujar,Sanjida H. Rangwala,Daniel Rausch,Lillian D. Riddick,Conrad L. Schoch,Andrei Shkeda,Susan S. Storz,Hanzhen Sun,Françoise Thibaud-Nissen,Igor Tolstoy,Raymond E. Tully,Anjana R. Vatsan,Craig Wallin,David Webb,Wendy Wu,Melissa J. Landrum,Avi Kimchi,Tatiana Tatusova,Michael DiCuccio,Paul Kitts,Terence Murphy,Kim D. Pruitt +54 more
TL;DR: The approach to utilizing available RNA-Seq and other data types in the authors' manual curation process for vertebrate, plant, and other species is summarized, and a new direction for prokaryotic genomes and protein name management is described.
Journal ArticleDOI
RefSeq: an update on mammalian reference sequences
Kim D. Pruitt,Garth Brown,Susan M. Hiatt,Françoise Thibaud-Nissen,Alexander Astashyn,Olga Ermolaeva,Catherine M. Farrell,Jennifer Hart,Melissa J. Landrum,Kelly M. McGarvey,Michael R. Murphy,Nuala A. O'Leary,Shashikant Pujar,Bhanu Rajput,Sanjida H. Rangwala,Lillian D. Riddick,Andrei Shkeda,Hanzhen Sun,Pamela Tamez,Raymond E. Tully,Craig Wallin,David Webb,Janet Weber,Wendy Wu,Michael DiCuccio,Paul Kitts,Donna Maglott,Terence Murphy,James Ostell +28 more
TL;DR: The National Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) database is a collection of annotated genomic, transcript and protein sequence records derived from data in public sequence archives and from computation, curation and collaboration.
Journal ArticleDOI
Current status and new features of the Consensus Coding Sequence database
Catherine M. Farrell,Nuala A. O'Leary,Rachel A. Harte,Jane E. Loveland,Laurens G. Wilming,Craig Wallin,Mark Diekhans,Daniel Barrell,Stephen M. J. Searle,Bronwen Aken,Susan M. Hiatt,Adam Frankish,Marie-Marthe Suner,Bhanu Rajput,Charles A. Steward,Garth Brown,Ruth Bennett,Michael R. Murphy,Wendy Wu,M. Kay,Jennifer Hart,Jeena Rajan,Janet Weber,Catherine Snow,Lillian D. Riddick,Toby Hunt,David Webb,Mark G. Thomas,Pamela Tamez,Sanjida H. Rangwala,Kelly M. McGarvey,Shashikant Pujar,Andrei Shkeda,Jonathan M. Mudge,José M. González,James G. R. Gilbert,Stephen J. Trevanion,Robert Baertsch,Jennifer Harrow,Tim Hubbard,James Ostell,David Haussler,Kim D. Pruitt +42 more
TL;DR: The current status and recent growth in the CCDS dataset is described, as well as recent changes to the web and FTP sites, which include more explicit reporting about the NCBI and Ensembl annotation releases being compared, new search and display options, the addition of biologically descriptive information and the approach to representing genes for which support evidence is incomplete.