K
Kathleen O'Neill
Researcher at University of Pennsylvania
Publications - 41
Citations - 6707
Kathleen O'Neill is an academic researcher from University of Pennsylvania. The author has contributed to research in topics: Medicine & Biology. The author has an hindex of 14, co-authored 28 publications receiving 4561 citations. Previous affiliations of Kathleen O'Neill include Washington University in St. Louis & National Institutes of Health.
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Journal ArticleDOI
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary,Mathew W. Wright,J. Rodney Brister,Stacy Ciufo,Diana Haddad,Richard McVeigh,Bhanu Rajput,Barbara Robbertse,Brian Smith-White,Danso Ako-adjei,Alexander Astashyn,Azat Badretdin,Yiming Bao,Olga Blinkova,Vyacheslav Brover,Vyacheslav Chetvernin,Jinna Choi,Eric Cox,Olga Ermolaeva,Catherine M. Farrell,Tamara Goldfarb,Tripti Gupta,Daniel H. Haft,Eneida L. Hatcher,Wratko Hlavina,Vinita Joardar,Vamsi K. Kodali,Wenjun Li,Donna Maglott,Patrick Masterson,Kelly M. McGarvey,Michael R. Murphy,Kathleen O'Neill,Shashikant Pujar,Sanjida H. Rangwala,Daniel Rausch,Lillian D. Riddick,Conrad L. Schoch,Andrei Shkeda,Susan S. Storz,Hanzhen Sun,Françoise Thibaud-Nissen,Igor Tolstoy,Raymond E. Tully,Anjana R. Vatsan,Craig Wallin,David Webb,Wendy Wu,Melissa J. Landrum,Avi Kimchi,Tatiana Tatusova,Michael DiCuccio,Paul Kitts,Terence Murphy,Kim D. Pruitt +54 more
TL;DR: The approach to utilizing available RNA-Seq and other data types in the authors' manual curation process for vertebrate, plant, and other species is summarized, and a new direction for prokaryotic genomes and protein name management is described.
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NCBI Taxonomy: a comprehensive update on curation, resources and tools.
Conrad L. Schoch,Stacy Ciufo,Mikhail Domrachev,Carol L. Hotton,Sivakumar Kannan,Rogneda Khovanskaya,Detlef D. Leipe,Richard McVeigh,Kathleen O'Neill,Barbara Robbertse,Shobha Sharma,Vladimir Soussov,John P. Sullivan,Lu Sun,Seán Turner,Ilene Karsch-Mizrachi +15 more
TL;DR: The National Center for Biotechnology Information (NCBI) Taxonomy includes organism names and classifications for every sequence in the nucleotide and protein sequence databases of the International Nucleotide Sequence Database Collaboration.
Journal ArticleDOI
RefSeq: an update on prokaryotic genome annotation and curation.
Daniel H. Haft,Michael DiCuccio,Azat Badretdin,Vyacheslav Brover,Vyacheslav Chetvernin,Kathleen O'Neill,Wenjun Li,Farideh Chitsaz,Myra K. Derbyshire,Noreen R. Gonzales,Marc Gwadz,Fu Lu,Gabriele H. Marchler,James S. Song,Narmada Thanki,Roxanne A. Yamashita,Chanjuan Zheng,Françoise Thibaud-Nissen,Lewis Y. Geer,Aron Marchler-Bauer,Kim D. Pruitt +20 more
TL;DR: The Reference Sequence (RefSeq) project at the National Center for Biotechnology Information provides annotation for over 95 000 prokaryotic genomes that meet standards for sequence quality, completeness, and freedom from contamination.
Journal ArticleDOI
RefSeq microbial genomes database: new representation and annotation strategy
TL;DR: The source of the microbial genomic sequences in the RefSeq collection is the set of primary sequence records submitted to the International Nucleotide Sequence Database public archives.
Journal ArticleDOI
The National Center for Biotechnology Information's Protein Clusters Database.
William Klimke,Richa Agarwala,Azat Badretdin,Slava Chetvernin,Stacy Ciufo,Boris Fedorov,Boris Kiryutin,Kathleen O'Neill,Wolfgang Resch,Sergei Resenchuk,Susan C. Schafer,Igor Tolstoy,Tatiana Tatusova +12 more
TL;DR: The NCBI Protein Clusters Database provides an efficient method to aggregate gene and protein annotation for researchers and is available at http://www.ncbi.nlm.nih.gov/sites/entrez?db=proteinclusters.