V
Vyacheslav Brover
Researcher at National Institutes of Health
Publications - 12
Citations - 5650
Vyacheslav Brover is an academic researcher from National Institutes of Health. The author has contributed to research in topics: Medicine & Gene. The author has an hindex of 5, co-authored 6 publications receiving 3660 citations.
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Journal ArticleDOI
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary,Mathew W. Wright,J. Rodney Brister,Stacy Ciufo,Diana Haddad,Richard McVeigh,Bhanu Rajput,Barbara Robbertse,Brian Smith-White,Danso Ako-adjei,Alexander Astashyn,Azat Badretdin,Yiming Bao,Olga Blinkova,Vyacheslav Brover,Vyacheslav Chetvernin,Jinna Choi,Eric Cox,Olga Ermolaeva,Catherine M. Farrell,Tamara Goldfarb,Tripti Gupta,Daniel H. Haft,Eneida L. Hatcher,Wratko Hlavina,Vinita Joardar,Vamsi K. Kodali,Wenjun Li,Donna Maglott,Patrick Masterson,Kelly M. McGarvey,Michael R. Murphy,Kathleen O'Neill,Shashikant Pujar,Sanjida H. Rangwala,Daniel Rausch,Lillian D. Riddick,Conrad L. Schoch,Andrei Shkeda,Susan S. Storz,Hanzhen Sun,Françoise Thibaud-Nissen,Igor Tolstoy,Raymond E. Tully,Anjana R. Vatsan,Craig Wallin,David Webb,Wendy Wu,Melissa J. Landrum,Avi Kimchi,Tatiana Tatusova,Michael DiCuccio,Paul Kitts,Terence Murphy,Kim D. Pruitt +54 more
TL;DR: The approach to utilizing available RNA-Seq and other data types in the authors' manual curation process for vertebrate, plant, and other species is summarized, and a new direction for prokaryotic genomes and protein name management is described.
Journal ArticleDOI
RefSeq: an update on prokaryotic genome annotation and curation.
Daniel H. Haft,Michael DiCuccio,Azat Badretdin,Vyacheslav Brover,Vyacheslav Chetvernin,Kathleen O'Neill,Wenjun Li,Farideh Chitsaz,Myra K. Derbyshire,Noreen R. Gonzales,Marc Gwadz,Fu Lu,Gabriele H. Marchler,James S. Song,Narmada Thanki,Roxanne A. Yamashita,Chanjuan Zheng,Françoise Thibaud-Nissen,Lewis Y. Geer,Aron Marchler-Bauer,Kim D. Pruitt +20 more
TL;DR: The Reference Sequence (RefSeq) project at the National Center for Biotechnology Information provides annotation for over 95 000 prokaryotic genomes that meet standards for sequence quality, completeness, and freedom from contamination.
Journal ArticleDOI
Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates.
Michael Feldgarden,Vyacheslav Brover,Daniel H. Haft,Arjun B. Prasad,Douglas J. Slotta,Igor Tolstoy,Gregory H. Tyson,Shaohua Zhao,Chih-Hao Hsu,Patrick F. McDermott,Daniel A. Tadesse,Cesar A. Morales,Mustafa Simmons,Glenn E. Tillman,Jamie L. Wasilenko,Jason P. Folster,William Klimke +16 more
TL;DR: AMRFinder appears to be a highly accurate AMR gene detection system based on the consistency between predicted AMR genotypes from AMRFinder and resistance phenotypes from the National Antimicrobial Resistance Monitoring System.
Journal ArticleDOI
AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence.
Michael Feldgarden,Vyacheslav Brover,Narjol Gonzalez-Escalona,Jonathan G. Frye,Julie Haendiges,Daniel H. Haft,Maria Hoffmann,James B. Pettengill,Arjun B. Prasad,Glenn E. Tillman,Gregory H. Tyson,William Klimke +11 more
TL;DR: The Reference Gene Catalog (RGC) as discussed by the authors has been extended to include putative acid, biocide, metal, stress resistance genes, in addition to virulence genes and species-specific point mutations.
Journal ArticleDOI
Phylogenomic analysis of the family Peptostreptococcaceae (Clostridium cluster XI) and proposal for reclassification of Clostridium litorale (Fendrich et al. 1991) and Eubacterium acidaminophilum (Zindel et al. 1989) as Peptoclostridium litorale gen. nov. comb. nov. and Peptoclostridium acidaminophilum comb. nov.
TL;DR: The phylogeny of the Peptostreptococcaceae was consistent with the recent proposals on creating seven new genera within this family, and revealed a tight clustering of Clostridium litorale and Eubacterium acidaminophilum.