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Aurélien Bernard
Researcher at University of Auvergne
Publications - 18
Citations - 1494
Aurélien Bernard is an academic researcher from University of Auvergne. The author has contributed to research in topics: Reference genome & Population genomics. The author has an hindex of 12, co-authored 16 publications receiving 1241 citations. Previous affiliations of Aurélien Bernard include Institut national de la recherche agronomique & Centre national de la recherche scientifique.
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Journal ArticleDOI
Comparative population genomics in animals uncovers the determinants of genetic diversity
Jonathan Romiguier,Philippe Gayral,Marion Ballenghien,Aurélien Bernard,Vincent Cahais,Anne Chenuil,Ylenia Chiari,Rémy Dernat,Laurent Duret,Nicolas Faivre,Etienne Loire,Joao M. Lourenco,Benoit Nabholz,Camille Roux,Georgia Tsagkogeorga,Alexandra Anh-Thu Weber,Lucy A. Weinert,Khalid Belkhir,Nicolas Bierne,Sylvain Glémin,Nicolas Galtier +20 more
TL;DR: It is shown that the diversity of a species is predictable, and is determined in the first place by its ecological strategy, and demonstrates the influence of long-term life-history strategies on species response to short-term environmental perturbations.
Journal ArticleDOI
Reference-Free Population Genomics from Next-Generation Transcriptome Data and the Vertebrate–Invertebrate Gap
Philippe Gayral,José Melo-Ferreira,Sylvain Glémin,Nicolas Bierne,Miguel Carneiro,Benoit Nabholz,Joao M. Lourenco,Paulo C. Alves,Paulo C. Alves,Marion Ballenghien,Nicolas Faivre,Khalid Belkhir,Vincent Cahais,Etienne Loire,Aurélien Bernard,Nicolas Galtier +15 more
TL;DR: The population genomic profile of a hare, a turtle, an oyster, a tunicate, and a termite were found to be intermediate between those of human and Drosophila, indicating that the discordant genomic diversity patterns that have been reported between these two species do not reflect a generalized vertebrate versus invertebrate gap.
Journal ArticleDOI
Bio++: Efficient Extensible Libraries and Tools for Computational Molecular Evolution
Laurent Guéguen,Sylvain Gaillard,Sylvain Gaillard,Sylvain Gaillard,Bastien Boussau,Bastien Boussau,Manolo Gouy,Mathieu Groussin,Nicolas C. Rochette,Thomas Bigot,David Fournier,Fanny Pouyet,Vincent Cahais,Aurélien Bernard,Celine Scornavacca,Benoit Nabholz,Annabelle Haudry,Loïc Dachary,Nicolas Galtier,Khalid Belkhir,Julien Y. Dutheil,Julien Y. Dutheil +21 more
TL;DR: The second major release of the Bio++ libraries is presented, which provides an extended set of classes and methods that notably provide built-in access to sequence databases and new data structures for handling and manipulating sequences from the omics era, such as multiple genome alignments and sequencing reads libraries.
Journal ArticleDOI
Metavir: a web server dedicated to virome analysis
Simon Roux,Michael Faubladier,Antoine Mahul,Nils Paulhe,Aurélien Bernard,Didier Debroas,François Enault +6 more
TL;DR: Metavir is a web server dedicated to the analysis of viral metagenomes (viromes) that makes it possible to explore viral diversity through automatically constructed phylogenies for selected marker genes, estimate gene richness through rarefaction curves and perform cross-comparison against other viromes using sequence similarities.
Journal ArticleDOI
Optical and physical mapping with local finishing enables megabase-scale resolution of agronomically important regions in the wheat genome
Gabriel Keeble-Gagnère,Philippe Rigault,Josquin Tibbits,Raj K. Pasam,Matthew J. Hayden,Kerrie Forrest,Zeev Frenkel,Abraham B. Korol,B. Emma Huang,Colin Cavanagh,Jen Taylor,Michael Abrouk,Andrew G. Sharpe,David Konkin,Pierre Sourdille,Benoit Darrier,Frédéric Choulet,Aurélien Bernard,Simone Rochfort,Adam M. Dimech,Nathan S. Watson-Haigh,Ute Baumann,Paul Eckermann,Delphine Fleury,Angéla Juhász,Sébastien Boisvert,Marc-Alexandre Nolin,Jaroslav Doležel,Hana Šimková,Helena Toegelová,Jan Šafář,Ming-Cheng Luo,Francisco Câmara,Matthias Pfeifer,Don Isdale,Johan Nyström-Persson,Iwgsc,Dal-Hoe Koo,Matthew Tinning,Dangqun Cui,Zhengang Ru,Rudi Appels +41 more
TL;DR: Sufficient genome sequence information is shown to now be available for the wheat community to produce sequence-finished releases of each chromosome of the reference genome.