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Bertrand Z. Yeung
Publications - 16
Citations - 7427
Bertrand Z. Yeung is an academic researcher. The author has contributed to research in topics: Transcriptome & Gene expression. The author has an hindex of 10, co-authored 15 publications receiving 898 citations.
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Journal ArticleDOI
Integrated analysis of multimodal single-cell data
Yuhan Hao,Stephanie Hao,Erica Andersen-Nissen,William M. Mauck,Shiwei Zheng,Andrew Butler,Maddie Jane Lee,Aaron J. Wilk,Charlotte A. Darby,Michael Zager,Paul Hoffman,Marlon Stoeckius,Efthymia Papalexi,Eleni P. Mimitou,Jaison Jain,Avi Srivastava,Tim Stuart,Lamar M. Fleming,Bertrand Z. Yeung,Angela J. Rogers,Juliana M. McElrath,Catherine A. Blish,Raphael Gottardo,Peter Smibert,Rahul Satija +24 more
TL;DR: Weighted-nearest neighbor analysis as mentioned in this paper is an unsupervised framework to learn the relative utility of each data type in each cell, enabling an integrative analysis of multiple modalities.
Posted ContentDOI
Integrated analysis of multimodal single-cell data
Yuhan Hao,Stephanie Hao,Erica Andersen-Nissen,William M. Mauck,Shiwei Zheng,Andrew Butler,Maddie Jane Lee,Aaron J. Wilk,Charlotte A. Darby,Michael Zagar,Paul Hoffman,Marlon Stoeckius,Efthymia Papalexi,Eleni P. Mimitou,Jaison Jain,Avi Srivastava,Tim Stuart,Lamar Ballweber Fleming,Bertrand Z. Yeung,Angela J. Rogers,Juliana M. McElrath,Catherine A. Blish,Raphael Gottardo,Peter Smibert,Rahul Satija +24 more
TL;DR: ‘weighted-nearest neighbor’ analysis is introduced, an unsupervised framework to learn the relative utility of each data type in each cell, enabling an integrative analysis of multiple modalities.
Journal ArticleDOI
Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics
Marlon Stoeckius,Shiwei Zheng,Brian Houck-Loomis,Stephanie Hao,Bertrand Z. Yeung,William M. Mauck,Peter Smibert,Rahul Satija +7 more
TL;DR: Cell Hashing is introduced, where oligo-tagged antibodies against ubiquitously expressed surface proteins uniquely label cells from distinct samples, which can be subsequently pooled and can robustly identify cross-sample multiplets.
Journal ArticleDOI
Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells
Eleni P. Mimitou,Caleb A. Lareau,Kelvin Y. Chen,Kelvin Y. Chen,Andre Luiz Zorzetto-Fernandes,Yuhan Hao,Yusuke Takeshima,Wendy Luo,Tse Shun Huang,Bertrand Z. Yeung,Efthymia Papalexi,Pratiksha I. Thakore,Tatsuya Kibayashi,James B. Wing,Mayu Hata,Rahul Satija,Kristopher L. Nazor,Shimon Sakaguchi,Shimon Sakaguchi,Leif S. Ludwig,Leif S. Ludwig,Leif S. Ludwig,Vijay G. Sankaran,Vijay G. Sankaran,Aviv Regev,Peter Smibert +25 more
TL;DR: ASAP-seq as discussed by the authors uses a bridging approach that repurposes antibody:oligonucleotide conjugates designed for existing technologies that pair protein measurements with single-cell RNA sequencing.
Journal ArticleDOI
Nuclei multiplexing with barcoded antibodies for single-nucleus genomics
Jellert Gaublomme,Jellert Gaublomme,Bo Li,Bo Li,Cristin McCabe,Abigail Knecht,Yiming Yang,Eugene Drokhlyansky,Nicholas Van Wittenberghe,Julia Waldman,Danielle Dionne,Lan Nguyen,Philip L. De Jager,Bertrand Z. Yeung,Xinfang Zhao,Naomi Habib,Naomi Habib,Orit Rozenblatt-Rosen,Aviv Regev,Aviv Regev +19 more
TL;DR: An approach for multiplexing snRNA-seq is presented, using sample-barcoded antibodies to uniquely label nuclei from distinct samples, and a computational tool to assign the sample of origin is developed.