C
Charles Y. Lin
Researcher at Baylor College of Medicine
Publications - 128
Citations - 19573
Charles Y. Lin is an academic researcher from Baylor College of Medicine. The author has contributed to research in topics: Transcription factor & Enhancer. The author has an hindex of 42, co-authored 116 publications receiving 15889 citations. Previous affiliations of Charles Y. Lin include Harvard University & University of California, San Diego.
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Fast Equilibration of Water between Buried Sites and Bulk by MD with Parallel Monte Carlo Water Moves on GPUs
TL;DR: In this paper, a hybrid Monte Carlo/MD (MC/MD) method was proposed to accelerate the equilibration of water between buried cavities and the surrounding solvent, while sampling from the thermodynamically correct distribution of states.
Journal ArticleDOI
Targeting the Apoa1 locus for liver-directed gene therapy
Marco De Giorgi,Ang Li,Ayrea Hurley,Mercedes Barzi,Alexandria M. Doerfler,Nikitha Cherayil,Harrison E. Smith,Jonathan D. Brown,Charles Y. Lin,Karl-Dimiter Bissig,Gang Bao,William R. Lagor +11 more
TL;DR: In this article, the Apoa1 locus was identified and validated as a novel integration site that supports durable transgene expression in the liver for gene therapy applications, and the endogenous apoa1 promoter can drive robust and sustained expression of therapeutic proteins, such as apolipoprotein E (APOE), dramatically reducing plasma lipids in a model of hypercholesterolemia.
Posted ContentDOI
Transcriptional plasticity drives leukemia immune escape
Kenneth Eagle,Taku Harada,Jeremie Kalfon,Monika Perez,Yaser Heshmati,Jazmin Ewers,Jost Vrabic Koren,Joshua M. Dempster,Guillaume Kugener,Vikram R Paralkar,Charles Y. Lin,Neekesh V. Dharia,Neekesh V. Dharia,Kimberly Stegmaier,Kimberly Stegmaier,Stuart H. Orkin,Stuart H. Orkin,Maxim Pimkin,Maxim Pimkin +18 more
TL;DR: CorenODE as discussed by the authors is a computational algorithm for genome-wide transcription network decomposition that identifies the transcription factors (TFs) IRF8 and MEF2C as positive regulators and MYB and MEIS1 as negative regulators of MHC-II expression in AML cells.
Journal ArticleDOI
The Microanatomy of the Leukemic Stem Cell Niche in Murine Chronic Myelogenous Leukemia
Melanie Meister,Joel A. Spencer,Juwell W. Wu,Cher Zhao,Lymperi Stefania,Francesca Ferraro,Cristina Lo Celso,David T. Scadden,Richard A. Van Etten,Charles Y. Lin,Daniela S. Krause +10 more
TL;DR: The microanantomy of the LSC niche is investigated hypothesizing that it may differ from the normal HSPC niche, and it is shown that BCR-ABL1 + Lin – c-Kit + Sca-1 + (LKS) CD150 + CD48 – (L KS SLAM) cells, which harbor the L SC fraction in the CML model, homed to locations further away from the endosteum than their normal counterparts.
Journal ArticleDOI
KLF15 cistromes reveal a hepatocyte pathway governing plasma corticosteroid transport and systemic inflammation
Zhen-Zhen Jiang,Selma Z. Elsarrag,Qiming Duan,Edward L. LaGory,Zhe Wang,Michael Alexanian,Sarah McMahon,Ingrid C. Rulifson,Sarah A. B. Winchester,Yi Wang,Christian Vaisse,Jonathan D. Brown,Mattia Quattrocelli,Charles Y. Lin,Saptarsi M. Haldar +14 more
TL;DR: Critical mechanistic insight is provided into KLF15 function and a hepatocyte-intrinsic transcriptional module that potently regulates systemic corticosteroid transport and inflammation is identified.