Showing papers by "Francesco Salvatore published in 2015"

Differences in DNA methylation profile of Th1 and Th2 cytokine genes are associated with tolerance acquisition in children with IgE-mediated cow's milk allergy.

Abstract: Background Epigenetic changes in DNA methylation could regulate the expression of several allergy-related genes. We investigated whether tolerance acquisition in children with immunoglobulin E (IgE)-mediated cow’s milk allergy (CMA) is characterized by a specific DNA methylation profile of Th2 (IL-4, IL-5) and Th1 (IL-10, IFN-γ)-associated cytokine genes.

Targeted metabolomics in the expanded newborn screening for inborn errors of metabolism

Abstract: Inborn errors of metabolism are genetic disorders due to impaired activity of enzymes, transporters, or cofactors resulting in accumulation of abnormal metabolites proximal to the metabolic block, lack of essential products or accumulation of by-products. Many of these disorders have serious clinical consequences for affected neonates, and an early diagnosis allows presymptomatic treatment which can prevent severe permanent sequelae and in some cases death. Expanded newborn screening for these diseases is a promising field of targeted metabolomics. Here we report the application, between 2007 and 2014, of this approach to the identification of newborns in southern Italy at risk of developing a potentially fatal disease. The analysis of amino acids and acylcarnitines in dried blood spots by tandem mass spectrometry revealed 24 affected newborns among 45 466 infants evaluated between 48 and 72 hours of life (overall incidence: 1 : 1894). Diagnoses of newborns with elevated metabolites were confirmed by gas chromatography-mass spectrometry, biochemical studies, and genetic analysis. Five infants were diagnosed with medium-chain acyl CoA dehydrogenase deficiency, 1 with methylmalonic acidemia with homocystinuria type CblC, 2 with isolated methylmalonic acidemia, 1 with propionic acidemia, 1 with isovaleric academia, 1 with isobutyryl-CoA dehydrogenase deficiency, 1 with beta ketothiolase deficiency, 1 with short branched chain amino acid deficiency, 1 with 3-methlycrotonyl-CoA carboxylase deficiency, 1 with formimino-transferase cyclodeaminase deficiency, and 1 with cystathionine-beta-synthase deficiency. Seven cases of maternal vitamin B12 deficiency and 1 case of maternal carnitine uptake deficiency were detected. This study supports the widespread application of metabolomic-based newborn screening for these genetic diseases.

Novel mitochondrial protein interactors of immunoglobulin light chains causing heart amyloidosis

Abstract: In immunoglobulin (Ig) light-chain (LC) (AL) amyloidosis, AL deposition translates into life-threatening cardiomyopathy. Clinical and experimental evidence indicates that soluble cardiotoxic LCs are themselves harmful for cells, by which they are internalized. Hypothesizing that interaction of soluble cardiotoxic LCs with cellular proteins contributes to damage, we characterized their interactome in cardiac cells. LCs were purified from patients with AL amyloidosis cardiomyopathy or multiple myeloma without amyloidosis (the nonamyloidogenic/noncardiotoxic LCs served as controls) and employed at concentrations in the range observed in AL patients' sera. A functional proteomic approach, based on direct and inverse coimmunoprecipitation and mass spectrometry, allowed identifying LC-protein complexes. Findings were validated by colocalization, fluorescence lifetime imaging microscopy (FLIM)-fluorescence resonance energy transfer (FRET), and ultrastructural studies, using human primary cardiac fibroblasts (hCFs) and stem cell-derived cardiomyocytes. Amyloidogenic cardiotoxic LCs interact in vitro with specific intracellular proteins involved in viability and metabolism. Imaging confirmed that, especially in hCFs, cardiotoxic LCs (not controls) colocalize with mitochondria and spatially associate with selected interactors: mitochondrial optic atrophy 1-like protein and peroxisomal acyl-coenzyme A oxidase 1 (FLIM-FRET efficiencies 11 and 6%, respectively). Cardiotoxic LC-treated hCFs display mitochondrial ultrastructural changes, supporting mitochondrial involvement. We show that cardiotoxic LCs establish nonphysiologic protein-protein contacts in human cardiac cells, offering new clues on the pathogenesis of AL cardiomyopathy.

Human anti-nucleolin recombinant immunoagent for cancer therapy

Abstract: Nucleolin (NCL) is a nucleocytoplasmic protein involved in many biological processes, such as ribosomal assembly, rRNA processing, and mRNA stabilization. NCL also regulates the biogenesis of specific microRNAs (miRNAs) involved in tumor development and aggressiveness. Interestingly, NCL is expressed on the surface of actively proliferating cancer cells, but not on their normal counterparts. Therefore, NCL is an attractive target for antineoplastic treatments. Taking advantage of phage-display technology, we engineered a fully human single-chain fragment variable, named 4LB5. This immunoagent binds NCL on the cell surface, it is translocated into the cytoplasm of target cells, and it abrogates the biogenesis of NCL-dependent miRNAs. Binding of 4LB5 to NCL on the cell surface of a variety of breast cancer and hepatocellular carcinoma cell lines, but not to normal-like MCF-10a breast cells, dramatically reduces cancer cell viability and proliferation. Finally, in orthotopic breast cancer mouse models, 4LB5 administration results in a significant reduction of the tumor volume without evident side effects. In summary, here we describe, to our knowledge, the first anti-NCL single-chain fragment variable displaying antineoplastic activity against established solid tumors, which could represent the prototype of novel immune-based NCL-targeting drugs with clinical potential as diagnostic and therapeutic tools in a wide variety of human cancers.

A role for D-aspartate oxidase in schizophrenia and in schizophrenia-related symptoms induced by phencyclidine in mice

Abstract: Increasing evidence points to a role for dysfunctional glutamate N-methyl-D-aspartate receptor (NMDAR) neurotransmission in schizophrenia. D-aspartate is an atypical amino acid that activates NMDARs through binding to the glutamate site on GluN2 subunits. D-aspartate is present in high amounts in the embryonic brain of mammals and rapidly decreases after birth, due to the activity of the enzyme D-aspartate oxidase (DDO). The agonistic activity exerted by D-aspartate on NMDARs and its neurodevelopmental occurrence make this D-amino acid a potential mediator for some of the NMDAR-related alterations observed in schizophrenia. Consistently, substantial reductions of D-aspartate and NMDA were recently observed in the postmortem prefrontal cortex of schizophrenic patients. Here we show that DDO mRNA expression is increased in prefrontal samples of schizophrenic patients, thus suggesting a plausible molecular event responsible for the D-aspartate imbalance previously described. To investigate whether altered D-aspartate levels can modulate schizophrenia-relevant circuits and behaviors, we also measured the psychotomimetic effects produced by the NMDAR antagonist, phencyclidine, in Ddo knockout mice (Ddo−/−), an animal model characterized by tonically increased D-aspartate levels since perinatal life. We show that Ddo−/− mice display a significant reduction in motor hyperactivity and prepulse inhibition deficit induced by phencyclidine, compared with controls. Furthermore, we reveal that increased levels of D-aspartate in Ddo−/− animals can significantly inhibit functional circuits activated by phencyclidine, and affect the development of cortico–hippocampal connectivity networks potentially involved in schizophrenia. Collectively, the present results suggest that altered D-aspartate levels can influence neurodevelopmental brain processes relevant to schizophrenia.

Cracking the Code of Human Diseases Using Next-Generation Sequencing: Applications, Challenges, and Perspectives

Abstract: Next-generation sequencing (NGS) technologies have greatly impacted on every field of molecular research mainly because they reduce costs and increase throughput of DNA sequencing. These features, together with the technology's flexibility, have opened the way to a variety of applications including the study of the molecular basis of human diseases. Several analytical approaches have been developed to selectively enrich regions of interest from the whole genome in order to identify germinal and/or somatic sequence variants and to study DNA methylation. These approaches are now widely used in research, and they are already being used in routine molecular diagnostics. However, some issues are still controversial, namely, standardization of methods, data analysis and storage, and ethical aspects. Besides providing an overview of the NGS-based approaches most frequently used to study the molecular basis of human diseases at DNA level, we discuss the principal challenges and applications of NGS in the field of human genomics.

Design and activity of a cyclic mini-β-defensin analog: a novel antimicrobial tool.

Abstract: We have designed a cyclic 17-amino acid β-defensin analog featuring a single disulfide bond. This analog, designated "AMC" (ie, antimicrobial cyclic peptide), combines the internal hydrophobic domain of hBD1 and the C-terminal charged region of hBD3. The novel peptide was synthesized and characterized by nuclear magnetic resonance spectroscopy. The antimicrobial activities against gram-positive and gram-negative bacteria as well as against herpes simplex virus type 1 were analyzed. The cytotoxicity and serum stability were assessed. Nuclear magnetic resonance of AMC in aqueous solution suggests that the structure of the hBD1 region, although not identical, is preserved. Like the parent defensins, AMC is not cytotoxic for CaCo-2 cells. Interestingly, AMC retains the antibacterial activity of the parent hBD1 and hBD3 against Pseudomonas aeruginosa, Enterococcus faecalis, and Escherichia coli, and exerts dose-dependent activity against herpes simplex virus type 1. Moreover, while the antibacterial and antiviral activities of the oxidized and reduced forms of the parent defensins are similar, those of AMC are significantly different, and oxidized AMC is also considerably more stable in human serum. Taken together, our data also suggest that this novel peptide may be added to the arsenal of tools available to combat antibiotic-resistant infectious diseases, particularly because of its potential for encapsulation in a nanomedicine vector.

Multistage Nanovectors Enhance the Delivery of Free and Encapsulated Drugs.

Abstract: Nanoparticles have considerable potential for cancer imaging and therapy due to their small size and prolonged circulation. However, biological barriers can impede the delivery of a sufficient dose of a drug to the target site, thereby also resulting in the accumulation of toxic compounds within healthy tissues, and systemic toxicity. Multistage nanovectors (MSV) preferentially accumulate on inflamed endothelium, and can thus serve as carriers for drugs and nanoparticles. Herein, we describe the loading of free (i.e., melittin) and nano-encapsulated (i.e., doxorubicin-loaded micelles) drugs into MSV, and report the impact of surface charge and pore size on drug loading. For both drug formulations, negatively charged MSV (i.e., oxidized) with larger pores were shown to retain higher concentrations of payloads compared to positively charged (i.e., APTES-modified) MSV with small pores. Treatment of human umbilical vein endothelial cells (HUVEC) with melittin-loaded MSV (MEL@MSV) resulted in an 80% reduction in cell viability after 3 days. Furthermore, MEL@MSV conjugated with antivascular endothelial growth factor receptor 2 (VEGFR2) antibodies displayed preferential targeting and delivery of MEL to activated HUVEC expressing VEGFR2. Treatment of HUVEC and MCF7 cells with doxorubicin-loaded micelles (DOXNP@MSV) resulted in a 23% and 47% reduction in cell viability, respectively. Taken together, these results demonstrate increased loading of a payload in oxidized, large pore MSV, and effective delivery of free and nano-encapsulated drugs to endothelial and cancer cells.

A Strategy for GC/MS Quantification of Polar Compounds via their SilylatedSurrogates: Silylation and Quantification of Biological Amino Acids

Abstract: Substitution of polar functionalized compounds with silylated (e.g., trimethylsilylated) surrogates prior to GC/ MS analysis is a widely used analytical strategy. Calibration is a most demanding step of this strategy. In fact, a calibration function is usually acquired by converting known amounts of the pure analyte to its silylated surrogate using the same conditions employed for processing unknown samples. The cumbersome need of acquiring a new calibration function prevents, to a large extend, the possibility of modifying silylation and instrumental settings on a sample by sample basis as would be appropriate in a number of cases. The modified standard additions calibration method, suggested in this paper, overcomes this difficulty by integrating in a single analytical procedure calibration and sample analysis. Furthermore, the suggested procedure compensates for matrix effects which may be a serious source of inaccuracy and is a tool that can be used during method development in order to find the most suitable silylation conditions for a given analyte. The implementation and benefits of the modified standard additions calibration method are explored in this paper on the basis of a symbolic but enlightening experiment dealing with the very representative GC/MS quantification of biological amino acids via their trimethylsilylated derivatives.

Late diagnosis of Fabry disease caused by a de novo mutation in a patient with end stage renal disease

Abstract: Background We present the case of a white 35-year-old male with a diagnosis of Fabry disease and negative family history.

Understanding Complexometric Titrations of Metal Cations with Aminopolycarboxylic Acids (EDTA and Analogs) within the frame of the Notion of Reactions between Groups of Chemical Species

Abstract: In spite of the apparent technical simplicity with which visual complexometric titrations of metal cations with aminopolycarboxylic acids titrants are performed, a complex chemistry takes place in the titrated solution during the titration, due to the chemical environment and to the insuppressible chemical properties of metal cations, aminopolycarboxylic acids and metallochromic indicators. This chemical complexity makes rigorous exposition and evaluations of complexometric titrations arduous. Nonetheless, by the introduction of the notions of groups of chemical species and reactions between groups of chemical species (with the connected concept of conditional formation constant), a frame is created within which complexometric titrations with aminopolycarboxylic acids can be collocated and which allows a reasonably simple presentation and evaluation of the analytically relevant aspects of this type of titrations. In a sense, the well known concept of conditional complex formation constant is updated in a way that facilitates understanding and use.

Photoletter to the editor: Lamellar ichthyosis and arthrogryposis in a premature neonate.

Abstract: Lamellar ichthyosis is a rare congenital disorder characterized by collodion membrane at birth and facial anomalies (eclabium and ectropion). The major underlying genetic defect is in TGM1, with mutations of this gene found in 50% of patients. An early diagnosis is fundamental in view of establishing a specific treatment due to the severity of the disease. We report a case of severe lamellar ichthyosis and arthrogryposis, without the typical facial presentation, negative for TGM1 mutations. The clinical improvement was achieved only after treatment with oral retinoids, highlighting the importance of early diagnosis and prompt administration of a specific therapy.

Riboflavin (Vitamin B2) Assay by Adsorptive Cathodic Stripping Voltammetry (Adcsv) at the Hanging Mercury Drop Electrode (HMDE)

Abstract: In this study the interactions of Riboflavin (Vitamin B2) with a mercury surface are investigated. Firstly, by using Cyclic Voltammetry, it is demonstrated that Riboflavin can be efficiently accumulated, by adsorption from buffered solutions containing an excess of NaClO4, onto the mercury drop of a HMDE. Secondly, it is shown that the adsorbed Riboflavin can be reduced through an electrochemical reaction whose stoichiometry is extricated by confronting simulated with experimental CV voltammograms acquired in a range of pH between about four and nine. Finally, the cathodic current, sustained by the surface reduction of Riboflavin, is exploited for assaying Riboflavin via Differential Pulse Adsorption Cathodic Stripping Voltammetry (DP AdCSV) within the frame of the standard additions calibration procedure. By applying the suggested DP AdCSV procedure with standard voltammetric equipment, typical DP settings and pre-electrolysis time of about 10 s, a linear response is maintained if Riboflavin concentration in the electrolysed solution does not exceed about 2 mg/l. On the other side, a limit of detection (expressed as the concentration of Riboflavin in the electrolysed solution) of 7 μg/l has been achieved with a pre-electrolysis time of 68 s.

pH and Acid-Base Equilibrium Calculations via a Matrix Representation of Solutions of Acids and/or Bases

Abstract: In this article we implement the idea of representing an aqueous solution of acids and/or bases with a matrix from which the pH and equilibrium concentrations of all species in any described solution can be extracted. Given that this matrix can be readily generated using an ad hoc MS Excel sheet, whatever pH calculation is reduced to the problem of selecting a row from the matrix by using as a guide the proton balance equation in the solution. A special scheme is presented allowing the needed proton balance relation to be derived from the specified solution data in all cases. This preserves the fundamental unity of the topic without sacrificing chemical understanding and simplicity. By consequence, the presented calculation technique is eminently suitable to be used in introductory courses as a complement, an extension or a substitute whenever the usual way of dealing with the topic (which, in general, consists in developing a menu of special cases, formulas and/or algebraic procedures) is judged insufficient. A MS Excel file named , attached to the present paper as supporting material, allows the matrix representation of any given solution to be developed in a very short time.

Oncoproteomic approaches to cancer marker discovery: the case of colorectal cancer

Abstract: Colorectal cancer (CRC) is one of the most common types of cancer; it is diagnosed in more than one million people each year and causes the death of about half of them. Early detection can help to decrease CRC-related mortality. In fact, the 5-year survival rate exceeds 90 % when the disease is localized and is only 10 % in case of metastases. Consequently, it is imperative to improve methods for the early detection of the disease. In this context, genomic approaches have resulted in new CRC biomarkers and have helped to shed light on the genetic basis of cancer as a whole. However, the proteome provides a more dynamic and faithful image of the genetic program of a cell. Hence, given the importance of proteins as effectors of cellular behavior, proteomic analysis has the potential to identify biomarkers that can help to classify and predict CRC. Several proteomic technique, such as matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS), quantitative isotopic protein labeling (SILAC, ICAT, and iTRAQ), and two-dimensional gel electrophoresis (2D-PAGE and 2D-DIGE), are being used in cancer research and can improve the diagnosis of patients; they are also helping to optimize personalized therapy. In this chapter, the main proteomic approaches used in biomarker research will be discussed, together with their impact and potential in the clinical setting. The proteomic biomarkers currently used for CRC diagnosis and/or therapy monitoring will be also described. List of Abbreviations 2D-DIGE Two-Dimensional Differential In-gel Electrophoresis 2D-PAGE Two-Dimensional Polyacrylamide Gel Electrophoresis APC Adenomatous Polyposis Coli CEA Carcinoembryonic Antigen CRC Colorectal Cancer Cy2 Cyanine 2 Fluorescent Dye Cy3 Cyanine 3 Fluorescent Dye Cy5 Cyanine 5 Fluorescent Dye DCBE Double-Contrast Barium Enema ESI Electrospray Ionization FIT Fecal Immunological Test FOBT Fecal Occult Blood Test *Email: salvator@unina.it Biomarkers in Cancer DOI 10.1007/978-94-007-7744-6_16-1 # Springer Science+Business Media Dordrecht 2014

Carcinoembryonic antigen family cell adhesion molecules (CEACAM) as colorectal cancer biomarkers

Abstract: Each year, nearly one million people develop colorectal cancer, and 50 % of them are expected to die because of cancer within 5 years of diagnosis. Over the last two decades, significant advances in screening, surgery, adjuvant chemotherapy, and patient monitoring have improved the 5-year survival rate. Colorectal cancer is a molecularly heterogeneous disease, and the analysis of its molecular signatures and the identification of colorectal cancer biomarkers will lead to better screening approaches and personalized therapeutic plans. A biomarker is a substance that can be measured and used as an indicator of a biological and/or pathological state. In cancer pathology, biomarkers can be used to detect the disease, to predict prognosis or response to therapy, and to evaluate the efficacy of therapy thereby improving the patient’s life expectancy and quality of life. The carcinoembryonic antigen (CEA) is the biomarker most frequently used in colorectal cancer. It is effective in the surveillance of colorectal cancer patients and in monitoring the efficacy of therapy, whereas it is less useful in colorectal screening. Recent studies indicate that also CEA-related proteins (CEACAMs) are promising potential colorectal cancer biomarkers. CEA and CEACAM proteins play important roles in cancer pathology, and the analysis of their functions will be useful for the identification of diagnostic and/or prognostic factors and therapeutic targets in colorectal and other cancers. List of Abbreviations CEA Carcinoembyonic Antigen CEACAM Carcinoembryonic Antigen-Family Cell Adhesion Molecule FOBT Fecal Occult Blood Test GPI Glycosylphosphatidylinositol Ig Immunoglobulin IgCAM Ig-like Cell Adhesion Molecule PCR Polymerase Chain Reaction TNM Tumor Nodes Metastases Key Facts of Colorectal Cancer • The intestine is the main site of nutrient absorption; it is subdivided in small and large intestine. The latter comprises the right colon, transverse colon, left colon, sigma, and rectum. • Colorectal cancer develops from uncontrolled growth of colorectal mucosa cells. • Colorectal cancer is an epithelial cancer arising in almost 80 % of cases from nonmalignant lesions that turned into cancer within 5–10 years of their appearance. 686 M. Gemei et al.

Facts, Challenges, Difficulties and Hopes in Single-Cell Biology: Physiopathological Studies

Abstract: Single-cell approaches are being increasingly used to unravel the many diverse mechanisms underlying biological processes that characterize each cell irrespective of the influx of other cells even within the same tissue. Consequently, the interference of metabolites and nervous stimuli emanating from the circulatory or nervous system in a higher organism like man is avoided. However, while the single-cell approach yields a wealth of data about single-cell metabolism and internal regulatory mechanisms, information about interactions and interrelations among similar or dissimilar cells may remain obscure. Starting from these considerations, here we summarize, without attempting to be exhaustive, some areas in which we think single-cell biological studies could be effective in translational medicine and in other areas of applied sciences. In this short review we describe the facts, challenges and perspectives related to these issues.