G
Galen Xing
Publications - 5
Citations - 170
Galen Xing is an academic researcher. The author has contributed to research in topics: Biology & Medicine. The author has an hindex of 3, co-authored 5 publications receiving 170 citations.
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Journal ArticleDOI
A Python library for probabilistic analysis of single-cell omics data
Adam Gayoso,Romain Lopez,Galen Xing,Pierre Boyeau,Valeh Valiollah Pour Amiri,Justin Hong,Katherine Wu,Michael Jayasuriya,Edouard Mehlman,Maxime Langevin,Yining Liu,Jules Samaran,Gabriel Misrachi,Achille Nazaret,Oscar Clivio,Chenling Xu,Tal Ashuach,Mariano I. Gabitto,Mohammad Lotfollahi,Valentine Svensson,Eduardo da Veiga Beltrame,Vitalii Kleshchevnikov,Carlos Talavera-López,Lior Pachter,Fabian J. Theis,Aaron M. Streets,Michael I. Jordan,Jeffrey Regier,Nir Yosef +28 more
Journal ArticleDOI
Cell types of origin of the cell-free transcriptome
Mira N. Moufarrej,Robert C. Jones,Jim Karkanias,Mark A. Krasnow,Angela Oliveira Pisco,Stephen R. Quake,Julia Salzman,Nir Yosef,Bryan Bulthaup,Phillip Brown,William Harper,Marisa Hemenez,Ravikumar Ponnusamy,Ahmad Salehi,Bhavani A. Sanagavarapu,Eileen Spallino,Ksenia A. Waldo James M. Burnett Nikole Zifa Aaron Concepcion Gardner Kelly Neidlinger Wang,Ksenia A. Aaron,Waldo Concepcion,James M. Gardner,Burnett ‘Beau’ Kelly,Nikole A. Neidlinger,Zifa Wang,Sheela Saroja Maurizio Serena Y. Kyle J. Chenling Crasta Kolluru Morri Tan Travaglini Xu,Sheela Crasta,Saroja Kolluru,Maurizio Morri,Serena Y. Tan,Kyle J. Travaglini,Marcela Alcántara-Hernández,Nicole Almanzar,Jane Antony,Benjamin Beyersdorf,Deviana Burhan,Kruti Calcuttawala,Matthew M Carter,Charles Chan,Charles B. Chang,Stephen Chang,Alex Colville,Rebecca N Culver,Ivana Cvijovic,Gaetano D'Amato,Camille Ezran,Francisco X Galdos,Astrid Gillich,William R. Goodyer,Yan Hang,Alyssa Hayashi,Sahar Houshdaran,Xianxi Huang,Juan C. Irwin,SoRi Jang,Julia Vallve Juanico,Aaron M. Kershner,Soo-Un Kim,Bernhard Kiss,W. Kong,Maya E. Kumar,Angera H. Kuo,Rebecca Leylek,Baoxiang Li,Gabriel B. Loeb,Wan Jin Lu,Sruthi Mantri,Maxim Markovic,Patrick L McAlpine,Antoine de Morrée,Karim Mrouj,Shravani Mukherjee,Tyler Muser,Patrick Neuhöfer,Thi Diu Nguyen,Kimberly Perez,Ragini Phansalkar,Nazan Puluca,Zhen Qi,Poorvi Rao,Hayley Raquer-McKay,Nicholas Schaum,Bronwyn Scott,Bobak Seddighzadeh,Joes Segal,Sushmita Sen,Shaheen S. Sikandar,Sean P. Spencer,Lea C. Steffes,Varun R. Subramaniam,Aditi Swarup,Michael A. Swift,Will Van Treuren,Emily Trimm,Stefan Veizades,Sivakamasundari Vijayakumar,Kim Chi Vo,Wanxin Wang,Hannah N.W. Weinstein,Juliane Winkler,Timothy Wu,Jamie Xie,Andrea R. Yung,Yue Zhang,Angela M. Honey Norma F. Rene V. Michelle Jia Detweiler Mekonen Neff Sit Tan Yan,Angela M. Detweiler,Honey E. Mekonen,Norma F. Neff,Rene Sit,Michelle Tan,Jiamei Yan,Gregory R. Bean,Vivek Charu,Erna Forgo,Brock A. Martin,Michael G. Ozawa,Oscar Silva,Angus Toland,Venkata N. P. Vemuri,Shaked Afik,Kyle Awayan,Rob Bierman,Olga B. Botvinnik,Ashley Byrne,Michelle Chen,Roozbeh Dehghannasiri,Adam Gayoso,Alejandro A. Granados,Qiqing Li,Gita Mahmoudabadi,Aaron McGeever,Julia Eve Olivieri,Madeline Park,N. Ravikumar,Geoff Stanley,Weilun Tan,Alexander J. Tarashansky,Rohan Vanheusden,Peter L. Wang,Sheng Wang,Galen Xing,Chenling Xu,Les Dethlefsen,Po-yi Ho,Shixuan Liu,Jonathan S. Maltzman,Ross J. Metzger,Koki Sasagawa,Rahul P. Sinha,Hanbing Song,Bruce Wang,Steven E. Artandi,Philip A. Beachy,Michael F. Clarke,Linda C. Giudice,Franklin W. Huang,K. C. Huang,Juliana Idoyaga,Seung K. Kim,Christin S. Kuo,Patricia K. Nguyen,Thomas A. Rando,Kristy Red-Horse,Jeremy F. Reiter,David A. Relman,Justin L. Sonnenburg,Albert Wu,Sean M. Wu,Tony Wyss-Coray +166 more
TL;DR: In this paper , cell-free RNA from liquid biopsies can be analyzed to determine disease tissue of origin using the Tabula Sapiens transcriptomic cell atlas as well as individual tissue transcriptome cell atlases in combination with the Human Protein Atlas RNA consensus dataset.
Journal ArticleDOI
The scverse project provides a computational ecosystem for single-cell omics data analysis
I H Virshup,Danila Bredikhin,Lukas Heumos,Giovanni Palla,Gregor Sturm,Adam Gayoso,Ilia Kats,Mikaela Koutrouli,Philipp Angerer,Volker Bergen,Pierre Boyeau,Maren Büttner,Gökcen Eraslan,David Fischer,Justin Hong,Michal Klein,Marius Lange,Romain Lopez,Mohammad Lotfollahi,Malte D Luecken,Fidel Núñez Ramírez,Jeffrey Regier,Sergei Rybakov,A. C. Schaar,Valeh Valiollah Pour Amiri,P. Weiler,Galen Xing,Bonnie Berger,Dana Pe'er,Aviv Regev,Sarah A. Teichmann,Francesca Finotello,F. Alexander Wolf,Nir Yosef,Oliver Stegle,Fabian J. Theis +35 more
Posted ContentDOI
NF-κB inhibitor alpha has a cross-variant role during SARS-CoV-2 infection in ACE2-overexpressing human airway organoids
Camille R. Simoneau,Pei-Hung Chen,Galen Xing,Mir M. Khalid,Nathan L. Meyers,Jennifer M. Hayashi,Taha Y. Taha,Kristoffer E. Leon,Tal Ashuach,Krystal A. Fontaine,Lauren Rodriguez,Bastian Joehnk,Keith Walcott,Sreelakshmi Vasudevan,Xiaohui Fang,Mazharul I. Maishan,Shawn Schultz,Jeroen P. Roose,Michael A. Matthay,Anita Sil,Mehrdad Arjomandi,Nir Yosef,Melanie Ott +22 more
TL;DR: An adult stem cell-derived human airway organoid model overexpressing the ACE2 receptor that supports robust viral replication while maintaining 3D architecture and cellular diversity of the airway epithelium is described.
Journal ArticleDOI
Publisher Correction: Cell types of origin of the cell-free transcriptome
Mira N. Moufarrej,Robert C. Jones,Jim Karkanias,Mark A. Krasnow,Angela Oliveira Pisco,Stephen R. Quake,Julia Salzman,Nir Yosef,Bryan Bulthaup,Phillip Brown,William Harper,Marisa Hemenez,Ravikumar Ponnusamy,Ahmad Salehi,Bhavani A. Sanagavarapu,Eileen Spallino,Ksenia A. Waldo James M. Burnett Nikole Zifa Aaron Concepcion Gardner Kelly Neidlinger Wang,Ksenia A. Aaron,Waldo Concepcion,James M. Gardner,Burnett ‘Beau’ Kelly,Nikole A. Neidlinger,Zifa Wang,Sheela Saroja Maurizio Serena Y. Kyle J. Chenling Crasta Kolluru Morri Tan Travaglini Xu,Sheela Crasta,Saroja Kolluru,Maurizio Morri,Serena Y. Tan,Kyle J. Travaglini,Chenling Xu,Marcela Alcántara-Hernández,Nicole Almanzar,Jane Antony,Benjamin Beyersdorf,Deviana Burhan,Kruti Calcuttawala,Matthew M Carter,Charles Chan,Charles B. Chang,Alex Colville,Ivana Cvijovic,Gaetano D'Amato,Camille Ezran,Francisco X Galdos,Astrid Gillich,William R. Goodyer,Yan Hang,Alyssa Hayashi,Sahar Houshdaran,Xianxi Huang,Juan C. Irwin,SoRi Jang,Julia Vallve Juanico,Aaron M. Kershner,Soo-Un Kim,Bernhard Kiss,W. Kong,Maya E. Kumar,Angera H. Kuo,Rebecca Leylek,Bao Yu Li,Gabriel B. Loeb,Wan Jin Lu,Sruthi Mantri,Maxim Markovic,Patrick L McAlpine,Antoine de Morrée,Karim Mrouj,Shravani Mukherjee,Tyler Muser,Patrick Neuhöfer,T. D. Nguyen,Kimberly Perez,Ragini Phansalkar,Nazan Puluca,Zhen Qi,Poorvi Rao,Hayley Raquer-McKay,Nicholas Schaum,Bronwyn Scott,Bobak Seddighzadeh,Joes Segal,Sushmita Sen,Shaheen S. Sikandar,Sean P. Spencer,Lea C. Steffes,Varun R. Subramaniam,Aditi Swarup,Michael A. Swift,Will Van Treuren,Emily Trimm,Stefan Veizades,Sivakamasundari Vijayakumar,Kim Chi Vo,Sevahn K. Vorperian,Wanxin Wang,Hannah N.W. Weinstein,Juliane Winkler,Timothy Wu,Jamie Xie,Andrea R. Yung,Yue Zhang,Angela M. Honey Norma F. Rene V. Michelle Jia Detweiler Mekonen Neff Sit Tan Yan,Angela M. Detweiler,Honey E. Mekonen,Norma F. Neff,Rene Sit,Michelle Tan,Jiamei Yan,Gregory R. Bean,Vivek Charu,Erna Forgo,Brock A. Martin,Michael G. Ozawa,Oscar Silva,Angus Toland,Venkata N. P. Vemuri,Shaked Afik,Kyle Awayan,Rob Bierman,Olga B. Botvinnik,Ashley Byrne,Michelle Chen,Roozbeh Dehghannasiri,Adam Gayoso,Alejandro A. Granados,Qiqing Li,Gita Mahmoudabadi,Aaron McGeever,Julia Eve Olivieri,Madeline Park,N. Ravikumar,Geoff Stanley,Weilun Tan,Alexander J. Tarashansky,Rohan Vanheusden,Peter Wang,Sheng Wang,Galen Xing,Rebecca N Culver,Les Dethlefsen,Po-yi Ho,Shixuan Liu,Jonathan S. Maltzman,Ross J. Metzger,Koki Sasagawa,Rahul P. Sinha,Hanbing Song,Bruce Wang,Steven E. Artandi,Philip A. Beachy,Michael F. Clarke,Linda C. Giudice,Franklin W. Huang,K. C. Huang,Juliana Idoyaga,Seung K. Kim,Christin S. Kuo,Patricia K. Nguyen,Thomas A. Rando,Kristy Red-Horse,Jeremy F. Reiter,David A. Relman,Justin L. Sonnenburg,Albert Wu,Sean M. Wu,Tony Wyss-Coray +166 more