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Geoffrey L. Winsor
Researcher at Simon Fraser University
Publications - 30
Citations - 6674
Geoffrey L. Winsor is an academic researcher from Simon Fraser University. The author has contributed to research in topics: Genome & Population. The author has an hindex of 17, co-authored 27 publications receiving 4640 citations. Previous affiliations of Geoffrey L. Winsor include Memorial University of Newfoundland & University of British Columbia.
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Journal ArticleDOI
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
Brian Alcock,Amogelang R. Raphenya,Tammy T. Y. Lau,Kara K. Tsang,Mégane Bouchard,Arman Edalatmand,William Huynh,Anna-Lisa V. Nguyen,Annie A. Cheng,Sihan Liu,Sally Y. Min,Anatoly Miroshnichenko,Hiu-Ki R Tran,Rafik El Werfalli,Jalees A. Nasir,Martins Oloni,David Speicher,Alexandra Florescu,Bhavya Singh,Mateusz Faltyn,Anastasia Hernández-Koutoucheva,Arjun N. Sharma,Emily Bordeleau,Andrew C. Pawlowski,Haley L. Zubyk,Damion M. Dooley,Emma Griffiths,Finlay Maguire,Geoffrey L. Winsor,Robert G. Beiko,Fiona S. L. Brinkman,William W. L. Hsiao,William W. L. Hsiao,Gary Van Domselaar,Gary Van Domselaar,Andrew G. McArthur +35 more
TL;DR: A new Resistomes & Variants module provides analysis and statistical summary of in silico predicted resistance variants from 82 pathogens and over 100 000 genomes, able to summarize predicted resistance using the information included in CARD, identify trends in AMR mobility and determine previously undescribed and novel resistance variants.
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InnateDB: systems biology of innate immunity and beyond—recent updates and continuing curation
Karin Breuer,Amir Foroushani,Matthew R. Laird,Carol Chen,Anastasia Sribnaia,Raymond Lo,Geoffrey L. Winsor,Robert E. W. Hancock,Fiona S. L. Brinkman,David J. Lynn +9 more
TL;DR: The recent integration of bovine data makes InnateDB the first integrated network analysis platform for this agriculturally important model organism, and a range of improvements to the integrated bioinformatics solutions are reported.
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IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets.
Claire Bertelli,Matthew R. Laird,Kelly P. Williams,Britney Y. Lau,Gemma Hoad,Geoffrey L. Winsor,Fiona S. L. Brinkman +6 more
TL;DR: The release of IslandViewer 4 is reported, with novel features to accommodate the needs of larger-scale microbial genomics analysis, while expanding GI predictions and improving its flexible visualization interface.
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Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database
Geoffrey L. Winsor,Emma Griffiths,Raymond Lo,Bhavjinder K. Dhillon,Julie A. Shay,Fiona S. L. Brinkman +5 more
TL;DR: To aid analysis of potentially thousands of complete and draft genome assemblies, this database and analysis platform was upgraded to integrate curated genome annotations and isolate metadata with enhanced tools for larger scale comparative analysis and visualization.
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Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes
Geoffrey L. Winsor,David Lam,Leanne Fleming,Raymond Lo,Matthew D. Whiteside,Nancy Yiu-Lin Yu,Robert E. W. Hancock,Fiona S. L. Brinkman +7 more
TL;DR: The latest release implements an ability to view sequence polymorphisms in P. aeruginosa PAO1 versus other reference strains, incomplete genomes and single gene sequences, which aids analysis of phenotypic variation between closely related isolates and strains, as well as wider population genomics and evolutionary studies.