H
Huaming Chen
Researcher at Salk Institute for Biological Studies
Publications - 51
Citations - 19304
Huaming Chen is an academic researcher from Salk Institute for Biological Studies. The author has contributed to research in topics: DNA methylation & Epigenomics. The author has an hindex of 27, co-authored 45 publications receiving 17366 citations. Previous affiliations of Huaming Chen include University of Pennsylvania & Howard Hughes Medical Institute.
Papers
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Journal ArticleDOI
PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants.
Björn C. Willige,Mark Zander,Chan Yul Yoo,Chan Yul Yoo,Amy Phan,Renee M. Garza,Shelly A. Trigg,Shelly A. Trigg,Yupeng He,Joseph R. Nery,Huaming Chen,Meng Chen,Joseph R. Ecker,Joanne Chory +13 more
TL;DR: In this article, a PIF-INO80 regulatory module that is an intermediate step for allowing plants to change their growth trajectory in response to environmental changes was described. But the authors did not consider the effect of light on the DNA-binding properties of PIF7 and its impact on chromatin dynamics genome wide.
Peer ReviewDOI
Author response: Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis
Katherine N. Chang,Shan Zhong,Matthew T. Weirauch,Gary C. Hon,Mattia Pelizzola,Hai Li,Shao-shan Carol Huang,Robert J. Schmitz,Mark A. Urich,Dwight Kuo,Joseph R. Nery,Hong Qiao,Ally Yang,Abdullah Jamali,Huaming Chen,Trey Ideker,Bing Ren,Bing Ren,Ziv Bar-Joseph,Timothy P. Hughes,Joseph R. Ecker +20 more
Journal ArticleDOI
Epigenetic silencing of a multifunctional plant stress regulator
Mark Zander,Björn C. Willige,Yupeng He,Thu A Nguyen,Amber E. Langford,Ramlah Nehring,Elizabeth Howell,Robert B. McGrath,Anna Bartlett,Rosa Castanon,Joseph R. Nery,Huaming Chen,Zhuzhu Zhang,Florian Jupe,Anna Stepanova,Robert J. Schmitz,Mathew G. Lewsey,Joanne Chory,Joseph R. Ecker +18 more
TL;DR: A chromatin-dependent regulatory mechanism at EIN2 requiring two genes is identified, which safeguards the expression of an essential multifunctional plant stress regulator.
Posted ContentDOI
The complex architecture and epigenomic impact of plant T-DNA insertions
Florian Jupe,Angeline Rivkin,Todd P. Michael,Mark Zander,S. Timothy Motley,Justin P. Sandoval,R. Keith Slotkin,Huaming Chen,Rosa Castanon,Joseph R. Nery,Joseph R. Ecker +10 more
TL;DR: New insights are provided into the structural impact of inserting foreign fragments into plant genomes and the utility of state-of-the-art long-range sequencing technologies to rapidly identify unanticipated genomic changes are demonstrated.
Posted ContentDOI
Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus
Yupeng He,Manoj Hariharan,David U. Gorkin,Diane E. Dickel,Chongyuan Luo,Rosa Castanon,Joseph R. Nery,Ah Young Lee,Brian A. Williams,Diane Trout,Henry Amrhein,Rongxin Fang,Huaming Chen,Bin Li,Axel Visel,Len A. Pennacchio,Bing Ren,Joseph R. Ecker +17 more
TL;DR: The methylome landscapes of 12 mouse tissues/organs at 8 developmental stages spanning from early embryogenesis to birth are profiled to provide a valuable resource for studying gene regulation during mammalian tissue/organ progression and for pinpointing regulatory elements involved in human developmental diseases.