S
Shelly A. Trigg
Researcher at University of Washington
Publications - 22
Citations - 2041
Shelly A. Trigg is an academic researcher from University of Washington. The author has contributed to research in topics: Biology & Interactome. The author has an hindex of 5, co-authored 18 publications receiving 1656 citations. Previous affiliations of Shelly A. Trigg include Harvard University & Salk Institute for Biological Studies.
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Journal ArticleDOI
A proteome-scale map of the human interactome network
Thomas Rolland,Murat Tasan,Benoit Charloteaux,Samuel J. Pevzner,Quan Zhong,Quan Zhong,Nidhi Sahni,Song Yi,Irma Lemmens,Celia Fontanillo,Roberto Mosca,Atanas Kamburov,Susan Dina Ghiassian,Susan Dina Ghiassian,Xinping Yang,Lila Ghamsari,Dawit Balcha,Bridget E. Begg,Pascal Braun,Marc Brehme,Martin P. Broly,Anne-Ruxandra Carvunis,Dan Convery-Zupan,Roser Corominas,Jasmin Coulombe-Huntington,Jasmin Coulombe-Huntington,Elizabeth Dann,Matija Dreze,Amélie Dricot,Changyu Fan,Eric A. Franzosa,Eric A. Franzosa,Fana Gebreab,Bryan J. Gutierrez,Madeleine F. Hardy,Mike Jin,Shuli Kang,Ruth Kiros,Guan Ning Lin,Katja Luck,Andrew MacWilliams,Jörg Menche,Jörg Menche,Ryan R. Murray,Alexandre Palagi,Matthew M. Poulin,Xavier Rambout,Xavier Rambout,John Rasla,Patrick Reichert,Viviana Romero,Elien Ruyssinck,Julie M. Sahalie,Annemarie Scholz,Akash A. Shah,Amitabh Sharma,Amitabh Sharma,Yun Shen,Kerstin Spirohn,Stanley Tam,Alexander O. Tejeda,Shelly A. Trigg,Jean-Claude Twizere,Jean-Claude Twizere,Kerwin Vega,Jennifer M. Walsh,Michael E. Cusick,Yu Xia,Yu Xia,Albert-László Barabási,Albert-László Barabási,Albert-László Barabási,Lilia M. Iakoucheva,Patrick Aloy,Javier De Las Rivas,Jan Tavernier,Michael A. Calderwood,David E. Hill,Tong Hao,Frederick P. Roth,Marc Vidal +80 more
TL;DR: The map uncovers significant interconnectivity between known and candidate cancer gene products, providing unbiased evidence for an expanded functional cancer landscape, while demonstrating how high-quality interactome models will help "connect the dots" of the genomic revolution.
Journal ArticleDOI
Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing
Xinping Yang,Xinping Yang,Jasmin Coulombe-Huntington,Shuli Kang,Gloria M. Sheynkman,Tong Hao,Aaron Richardson,Song Sun,Song Sun,Fan Yang,Yun A. Shen,Ryan R. Murray,Ryan R. Murray,Kerstin Spirohn,Bridget E. Begg,Bridget E. Begg,Miquel Duran-Frigola,Andrew MacWilliams,Samuel J. Pevzner,Samuel J. Pevzner,Quan Zhong,Quan Zhong,Shelly A. Trigg,Stanley Tam,Lila Ghamsari,Nidhi Sahni,Song Yi,Maria D. Rodriguez,Maria D. Rodriguez,Dawit Balcha,Guihong Tan,Michael Costanzo,Brenda J. Andrews,Charles Boone,Xianghong Jasmine Zhou,Kourosh Salehi-Ashtiani,Kourosh Salehi-Ashtiani,Benoit Charloteaux,Benoit Charloteaux,Alyce A. Chen,Michael A. Calderwood,Patrick Aloy,Frederick P. Roth,Frederick P. Roth,Frederick P. Roth,David E. Hill,Lilia M. Iakoucheva,Yu Xia,Yu Xia,Marc Vidal +49 more
TL;DR: This work cloned full-length open reading frames of alternatively spliced transcripts for a large number of human genes and used protein-protein interaction profiling to functionally compare hundreds of protein isoform pairs, revealing a widespread expansion of protein interaction capabilities through alternative splicing and suggesting that many alternative "isoforms" are functionally divergent (i.e., "functional alloforms").
Journal ArticleDOI
Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism
Roser Corominas,Xinping Yang,Guan Ning Lin,Shuli Kang,Yun Shen,Lila Ghamsari,Lila Ghamsari,Martin P. Broly,Maria J. Rodriguez,Stanley Tam,Shelly A. Trigg,Shelly A. Trigg,Changyu Fan,Song Yi,Murat Tasan,Irma Lemmens,Xingyan Kuang,Nan Zhao,Dheeraj Malhotra,Jacob J. Michaelson,Jacob J. Michaelson,Vladimir Vacic,Michael A. Calderwood,Frederick P. Roth,Frederick P. Roth,Jan Tavernier,Steve Horvath,Kourosh Salehi-Ashtiani,Kourosh Salehi-Ashtiani,Dmitry Korkin,Jonathan Sebat,David E. Hill,Tong Hao,Marc Vidal,Lilia M. Iakoucheva +34 more
TL;DR: A new interactome mapping approach is introduced by experimentally identifying interactions between brain-expressed alternatively spliced variants of ASD risk factors, demonstrating the critical role of spliceform networks for translating genetic knowledge into a better understanding of human diseases.
Journal ArticleDOI
CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping
Shelly A. Trigg,Shelly A. Trigg,Renee M. Garza,Andrew MacWilliams,Joseph R. Nery,Anna Bartlett,Rosa Castanon,Adeline Goubil,Joseph Feeney,Ronan C. O'Malley,Ronan C. O'Malley,Shao-shan Carol Huang,Zhuzhu Zhang,Mary Galli,Joseph R. Ecker +14 more
TL;DR: A massively multiplexed yeast two-hybrid method, CrY2H-seq, which uses a Cre recombinase interaction reporter to intracellularly fuse the coding sequences of two interacting proteins and next-generation DNA sequencing to identify these interactions en masse, is presented.
Journal ArticleDOI
PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants.
Björn C. Willige,Mark Zander,Chan Yul Yoo,Chan Yul Yoo,Amy Phan,Renee M. Garza,Shelly A. Trigg,Shelly A. Trigg,Yupeng He,Joseph R. Nery,Huaming Chen,Meng Chen,Joseph R. Ecker,Joanne Chory +13 more
TL;DR: In this article, a PIF-INO80 regulatory module that is an intermediate step for allowing plants to change their growth trajectory in response to environmental changes was described. But the authors did not consider the effect of light on the DNA-binding properties of PIF7 and its impact on chromatin dynamics genome wide.