H
Huaming Chen
Researcher at Salk Institute for Biological Studies
Publications - 51
Citations - 19304
Huaming Chen is an academic researcher from Salk Institute for Biological Studies. The author has contributed to research in topics: DNA methylation & Epigenomics. The author has an hindex of 27, co-authored 45 publications receiving 17366 citations. Previous affiliations of Huaming Chen include University of Pennsylvania & Howard Hughes Medical Institute.
Papers
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Genome Wide Patterns of Single Feature Polymorphism Diversity in Arabidopsis Thaliana
Samuel P. Hazen,Justin O. Borevitz,Todd P. Michael,Geoffrey P. Morris,Ivan Baxter,Tina T. Hu,Huaming Chen,Jonathan D. Werner,David E. Salt,Steve A. Kay,Joanne Chory,Detlef Weigel,Magnus Nordborg,M. Jones,Joseph R. Ecker +14 more
Posted ContentDOI
Single-cell DNA Methylome and 3D Multi-omic Atlas of the Adult Mouse Brain
Huan Liu,Qiurui Zeng,Jingtian Zhou,Anna Bartlett,Bang-An Wang,Peter Berube,Wei Tian,M. W. Kenworthy,Jordan Altshul,Joseph R. Nery,Huaming Chen,Rosa Castanon,Songpeng Zu,Yang Eric Li,Jacinta Lucero,Julia K. Osteen,Antonio Pinto-Duarte,Jasper Lee,Jon Rink,Nora Emerson,Carolyn O’Connor,Zizhen Yao,Kimberly A. Smith,Bosiljka Tasic,Hongkui Zeng,Chongyuan Luo,Jesse R. Dixon,Bing Ren,M. Margarita Behrens,Joseph R. Ecker +29 more
TL;DR: In this article , the authors employed optimized single-nucleus methylome (snmC-seq3) and multi-omic sequencing technologies to generate 301,626 methylomes and 176,003 chromatin conformation/methylome joint profiles from 117 dissected regions throughout the adult mouse brain.
Journal ArticleDOI
Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes
Federico Abascal,Reyes Acosta,Nicholas Addleman,Jessika Adrian,Veena Afzal,Bronwen Aken,Jennifer A. Akiyama,Omar M. Al Jammal,Henry Amrhein,Stacie M. Anderson,Gregory R. Andrews,Igor Antoshechkin,Kristin G. Ardlie,Joel Armstrong,Matthew Astley,Budhaditya Banerjee,Amira A. Barkal,If H. A. Barnes,Iros Barozzi,Daniel Barrell,Gemma Barson,Daniel Bates,Ulugbek K. Baymuradov,Cassandra Bazile,Michael A. Beer,Samantha Beik,M. A. Bender,Ruth Bennett,Louis Philip Benoit Bouvrette,Bradley E. Bernstein,Andrew Berry,Anand Bhaskar,Alexandra Bignell,Steven M. Blue,David M. Bodine,Carles Boix,Nathan Boley,Tyler M. Borrman,Beatrice Borsari,Alan P. Boyle,Laurel A. Brandsmeier,Alessandra Breschi,Emery H. Bresnick,Jason A. Brooks,Michael Buckley,Christopher B. Burge,Rachel Byron,Eileen W. Cahill,Lingling Cai,Lulu Cao,Mark F. Mc Carty,Rosa Castanon,Andres Castillo,Hassan Chaib,Esther T. Chan,Daniel R. Chee,Sora Chee,Hao Chen,Huaming Chen,Jiayu Chen,Songjie Chen,Surya B. Chhetri,Jyoti S. Choudhary,Jacqueline Chrast,Dongjun Chung,Declan Clarke,Neal A.L. Cody,Candice J. Coppola,Julie Coursen,Anthony D'Ippolito,Stephen George Dalton,Cassidy Danyko,R. Davidson,Jose Davila-Velderrain,Carrie A. Davis,Alden Deran,Gilberto DeSalvo,Gloria Despacio-Reyes,Colin N. Dewey,Morgan Diegel,Mark Diekhans,Vishnu Dileep,Bo Ding,Sarah Djebali,Alexander Dobin,Daniel Dominguez,Sarah Donaldson,Jorg Drenkow,Timothy R. Dreszer,Yotam Drier,Michael O. Duff,Douglas Dunn,Catharine L. Eastman,Matthew D. Edwards,Nicole C. El-Ali,Shaimae I. Elhajjajy,Keri Elkins,Andrew Emili,Charles B. Epstein,Rachel C. Evans,Iakes Ezkurdia,Kaili Fan,Nina Farrell,Elise A. Feingold,Anne-Maud Ferreira,Katherine I. Fisher-Aylor,Stephen Fitzgerald,Paul Flicek,Chuan-Sheng Foo,Kevin Fortier,Adam Frankish,Peter Freese,Shaliu Fu,Xiang-Dong Fu,Yu Fu,Yoko Fukuda-Yuzawa,Mariateresa Fulciniti,Alister P. W. Funnell,Idan Gabdank,Timur R. Galeev,Mingshi Gao,Carlos García Girón,Tyler H. Garvin,Chelsea Gelboin-Burkhart,Grigorios Georgolopoulos,Mark Gerstein,Belinda Giardine,David K. Gifford,Daniel A. Gilchrist,Shawn M. Gillespie,Thomas R. Gingeras,Peng Gong,Alvaro J. González,José M. González,Peter Good,Alon Goren,David U. Gorkin,Brenton R. Graveley,Michael Gray,Jack Greenblatt,Edward Griffiths,Mark Groudine,Fabian Grubert,Mengting Gu,Roderic Guigó,Hongbo Guo,Yu Guo,Yuchun Guo,Gamze Gursoy,Maria Gutierrez-Arcelus,Jessica Halow,Matthew P. Hardy,Manoj Hariharan,Arif Harmanci,Anne Harrington,Jennifer Harrow,Tatsunori Hashimoto,Richard Hasz,Meital Hatan,Eric Haugen,James E Hayes,Peng He,Yupeng He,Nastaran Fadaei Heidari,David Hendrickson,Elisabeth F. Heuston,Jason A. Hilton,Benjamin C. Hitz,Abigail Hochman,Cory Holgren,Lei Hou,Shuyu Hou,Yun-Hua Esther Hsiao,Shan Chun Hsu,Hui Huang,Tim Hubbard,Jack Huey,Timothy P. Hughes,Toby Hunt,Sean Ibarrientos,Robbyn Issner,Mineo Iwata,Osagie G. Izuogu,Tommi S. Jaakkola,Nader Jameel,Camden Sinclair Jansen,Lixia Jiang,Peng Jiang,Audra K. Johnson,Rory Johnson,Irwin Jungreis,Madhura Kadaba,Maya Kasowski,M.A. Kasparian,Momoe Kato,Rajinder Kaul,Trupti Kawli,M. Kay,Judith C. Keen,Sunduz Keles,Cheryl A. Keller,David R. Kelley,Pouya Kheradpour,Daniel S Kim,Anthony Kirilusha,Birgit Knoechel,Samantha Kuan,Michael J. Kulik,Sushant Kumar,Anshul Kundaje,Tanya Kutyavin,Julien Lagarde,Bryan R. Lajoie,Nicole J. Lambert,John Lazar,Ah Young Lee,Donghoon Lee,Elizabeth Lee,Jin Wook Lee,Kristen Lee,Christina S. Leslie,Shawn Levy,Bin Li,Hairi Li,Nan Li,Xiangrui Li,Yang Li,Ying Li,Yining Li,Yue Liu,Jin Lian,Max Libbrecht,Shin Lin,Yiing Lin,Dianbo Liu,Jason Liu,Peng Li,Tingting Liu,X. Shirley Liu,Yang Liu,Yaping Liu,Maria R. Long,Shaoke Lou,Jane E. Loveland,Aiping Lu,Yun Lu,Eric Lécuyer,Lijia Ma,Brandon J. Mannion,Michael Mannstadt,Deepa Manthravadi,Georgi K. Marinov,Fergal J. Martin,Eugenio Mattei,Kenneth McCue,Megan McEown,Graham McVicker,Sarah Meadows,Alexander Meissner,Eric M. Mendenhall,C. Luke Messer,Wouter Meuleman,Clifford A. Meyer,Steve Miller,Matthew G. Milton,Tejaswini Mishra,Dianna E. Moore,Helen M. Moore,Samuel H. Moore,Jennifer L. Moran,Jonathan M. Mudge,Nikhil C. Munshi,Rabi Murad,Richard M. Myers,Vivek Nandakumar,Preetha Nandi,Anil M Narasimha,Aditi K. Narayanan,Hannah Naughton,Fabio C. P. Navarro,Patrick A. Navas,Jurijs Nazarovs,Jemma Nelson,Shane Neph,Fidencio Neri,Joseph R. Nery,Amy R. Nesmith,J. Scott Newberry,Kimberly M. Newberry,Vu Ngo,R. W. Nguyen,Thai B. Nguyen,Tung Nguyen,Andrew Nishida,William Stafford Noble,Catherine S. Novak,Eva Maria Novoa,Briana M. Nunez,Charles W. O'Donnell,Sara H. Olson,Kathrina C. Onate,Ericka Otterman,Hakan Ozadam,Michael J. Pagán,Tsultrim Palden,Xinghua Pan,Yongjin Park,E. Christopher Partridge,Benedict Paten,Florencia Pauli-Behn,Michael J. Pazin,Baikang Pei,Len A. Pennacchio,Alexander R Perez,Emily Perry,Dmitri D. Pervouchine,Nishigandha N. Phalke,Quan T. Pham,Douglas H. Phanstiel,Ingrid Plajzer-Frick,Gabriel A. Pratt,Henry Pratt,Sebastian Preissl,Jonathan K. Pritchard,Yuri Pritykin,Qian Qin,Giovanni Quinones-Valdez,Ines Rabano,Ernest Radovani,Anil Raj,Nisha Rajagopal,Oren Ram,L. Ramirez,Ricardo Ramirez,Dylan M. Rausch,Soumya Raychaudhuri,Joseph Raymond,Rozita Razavi,Timothy E. Reddy,Thomas M. Reimonn,Bing Ren,Alexandre Reymond,Alex Reynolds,Suhn K. Rhie,Miguel Rivera,Brian S. Roberts,Jose Manuel Rodriguez,Russell J. Ryan,Eric Rynes,Denis Salins,Richard Sandstrom,Takayo Sasaki,Shashank Sathe,Daniel Savic,Alexandra Scavelli,Jonathan Scheiman,Christoph N. Schlaffner,Jeffery A. Schloss,Frank W. Schmitges,Lei-Hoon See,Anurag Sethi,Manu Setty,Anthony Shafer,Shuo Shan,Eilon Sharon,Quanwen Shen,Richard I. Sherwood,Minyi Shi,Sunyoung Shin,Noam Shoresh,Kyle Siebenthall,Cristina Sisu,Teri Slifer,Cricket A. Sloan,Anna M. Smith,Valentina Snetkova,Michael Snyder,Damek V. Spacek,Sharanya Srinivasan,Rohith Srivas,George Stamatoyannopoulos,John A. Stamatoyannopoulos,Rebecca Stanton,D. Steffan,Sandra Stehling-Sun,J. Seth Strattan,Amanda Su,Balaji Sundararaman,Marie-Marthe Suner,Tahin Fahmid Syed,Matt Szynkarek,Forrest Y. Tanaka,Daniel G. Tenen,Ming Chuin Teng,Jeffrey Thomas,David Toffey,Michael L. Tress,Diane Trout,Gosia Trynka,Junko Tsuji,Sean Upchurch,Oana Ursu,Barbara Uszczynska-Ratajczak,Mia C. Uziel,Alfonso Valencia,Benjamin Van Biber,A. van der Velde,Eric L. Van Nostrand,Yekaterina Vaydylevich,Jesús Vázquez,Alec Victorsen,Jost Vielmetter,Jeff Vierstra,Anna Vlasova,Christopher M. Vockley,Simona Volpi,Shinny Vong,Hao Wang,Mengchi Wang,Qin Wang,Ruth Wang,Tao Wang,Wei Wang,Xiao-feng Wang,Yanli Wang,Nathaniel Watson,Xintao Wei,Zhijie Wei,Hendrik Weisser,Sherman M. Weissman,Rene Welch,Robert E. Welikson,Zhiping Weng,Harm-Jan Westra,John W. Whitaker,Collin White,Kevin P. White,Andre Wildberg,Brian A. Williams,D. Wine,Heather Witt,Maxim Y Wolf,James Santa Barbara Wright,Rui Xiao,Xinshu Xiao,Jie Xu,Jinrui Xu,Koon-Kiu Yan,Yongqi Yan,Hongbo Yang,Xinqiong Yang,Yi-Wen Yang,Galip Gürkan Yardımcı,Brian A. Yee,Gene W. Yeo,Taylor Young,Tianxiong Yu,Feng Yue,Chris Zaleski,C. Zang,Haoyang Zeng,Weihua Zeng,Daniel R. Zerbino,Jieru Zhai,Lijun Zhan,Ye Zhan,Bohan Zhang,Jialing Zhang,Jing Zhang,Kai Zhang,Lijun Zhang,Peng Zhang,Qi Qi Zhang,Xiao-Ou Zhang,Yanxiao Zhang,Zhizhuo Zhang,Yuan Zhao,Ye Zheng,Guoqing Zhong,Xiaoyan Zhou,Yun Zhu,Jared Zimmerman,Rizi Ai,Shantao Li,Jill Moore,Michael J. Purcaro,Yin Shen,Mark Mackiewicz,Ali Mortazavi,Diane E. Dickel,Juan Carlos Rivera-Mulia,Joel Rozowsky,Axel Visel,David Gilbert,Job Dekker,John L. Rinn,Joseph R. Ecker,Manolis Kellis,Robert J. Klein,Peggy J. Farnham,J. Michael Cherry,Barbara J. Wold,Ross C. Hardison +502 more
Friction Anisotropy-Driven Domain Imaging on Exfoliated
Matija Dreze,Danielle Byrdsong,Amélie Dricot,Melissa Duarte,Fana Gebreab,Bryan J. Gutierrez,Andrew MacWilliams,Dario Monachello,M. Shahid Mukhtar,Patrick Reichert,Viviana Romero,Stanley Tam,Selma Waaijers,Evan M. Weiner,Marc Vidal,David E. Hill,Pascal Braun,Mary Galli,Anne-Ruxandra Carvunis,Michael E. Cusick,Frederick P. Roth,Murat Tasan,Junshi Yazaki,Yong-Yeol Ahn,Benoit Charloteaux,Huaming Chen,Jeffery L. Dangl,Joseph R. Ecker,Changyu Fan,Lantian Gai,Gourab Ghoshal,Claire Lurin,Jonathan D. Moore,Thomas Rolland,Robert J. Schmitz,William Spooner,Jean Vandenhaute,Doreen Ware,Wallonia-Brussels Federation,Robert W. Holley,Lardner Llp +40 more
Posted ContentDOI
Human Immune Cell Epigenomic Signatures in Response to Infectious Diseases and Chemical Exposures
Manoj Hariharan,Anna Bartlett,Cesar Barragan,Rosa Castanon,Haili Song,Joseph R. Nery,Andrew Aldridge,Jordan Altshul,M. W. Kenworthy,Wubin Ding,Huan Liu,Wei Tian,Jingtian Zhou,Huaming Chen,Bei Wei,T. Broderick,Micah T. McClain,Lisa L. Satterwhite,Thomas W. Burke,Elizabeth Petzold,Xiling Shen,Christopher W. Woods,Vance G. Fowler,Felicia Ruffin,Parinya Panuwet,Dana B. Barr,Anthony Kitson Smith,Rachel R. Spurbeck,Sindhu Vangeti,Irene Ramos,German Nudelman,Stuart C. Sealfon,Flora Castellino,Fabian Müller,William J. Greenleaf,Joseph R. Ecker +35 more
TL;DR: In this article , the DNA methylation signatures associated with multiple exposures in nine major immune cell types derived from peripheral blood mononuclear cells (PBMCs) at single-cell resolution were identified.