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Ina Nissen
Researcher at ETH Zurich
Publications - 8
Citations - 629
Ina Nissen is an academic researcher from ETH Zurich. The author has contributed to research in topics: Gene & Illumina dye sequencing. The author has an hindex of 5, co-authored 8 publications receiving 520 citations.
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Journal ArticleDOI
Clonal evolution and clinical correlates of somatic mutations in myeloproliferative neoplasms
Pontus Lundberg,Axel Karow,Ronny Nienhold,Renate Looser,Hui Hao-Shen,Ina Nissen,Sabine Girsberger,Thomas Lehmann,Jakob Passweg,Martin Stern,Christian Beisel,Robert Kralovics,Robert Kralovics,Radek C. Skoda +13 more
TL;DR: Surprisingly, the number of mutations between early and late patient samples did not significantly change, and during a total follow-up of 133 patient years, only 2 new mutations appeared, suggesting that the mutation rate in MPN is rather low.
Journal ArticleDOI
High-throughput sequencing for the identification of binding molecules from DNA-encoded chemical libraries.
Fabian Buller,Martina Steiner,Jörg Scheuermann,Luca Mannocci,Ina Nissen,Manuel Kohler,Christian Beisel,Dario Neri +7 more
TL;DR: The sequence distributions in DNA-encoded chemical library selections were found to be similar to the ones obtained using 454 technology, thus reinforcing the concept that DNA sequencing is an appropriate avenue for the decoding of library selections.
Journal ArticleDOI
Quantification of the spread of SARS-CoV-2 variant B.1.1.7 in Switzerland.
Chaoran Chen,Sarah Nadeau,Ivan Topolsky,Marc Manceau,Jana S. Huisman,Kim Philipp Jablonski,Lara Fuhrmann,David Dreifuss,Katharina Jahn,Christiane Beckmann,Maurice Redondo,Christoph Noppen,Lorenz Risch,Martin Risch,Nadia Wohlwend,Sinem Kas,Thomas Bodmer,Tim Roloff,Madlen Stange,Adrian Egli,Isabella Eckerle,Laurent Kaiser,Rebecca Denes,Mirjam Feldkamp,Ina Nissen,Natascha Santacroce,Elodie Burcklen,Catharine Aquino,Andreia Cabral de Gouvea,Maria Domenica Moccia,Simon Grüter,Timothy Sykes,Lennart Opitz,Griffin White,Laura Neff,Doris Popovic,Andrea Patrignani,Jay Tracy,Ralph Schlapbach,Emmanouil T. Dermitzakis,Keith Harshman,Ioannis Xenarios,Henri Pegeot,Lorenzo Cerutti,Deborah Penet,Anthony Blin,Melyssa Elies,Christian L. Althaus,Christian Beisel,Niko Beerenwinkel,Martin Ackermann,Tanja Stadler +51 more
TL;DR: This study estimates the transmission fitness advantage and the effective reproductive number of B.1.1-CoV-2 variant of Concern in Switzerland and quantifies the variant’s transmission Fitness advantage on a national and a regional scale.
Posted ContentDOI
Within-patient genetic diversity of SARS-CoV-2
Jack Kuipers,Jack Kuipers,Aashil A. Batavia,Aashil A. Batavia,Kim Philipp Jablonski,Kim Philipp Jablonski,Fritz Bayer,Fritz Bayer,Nico Borgsmüller,Nico Borgsmüller,Arthur Dondi,Arthur Dondi,Monica-Andreea Drăgan,Monica-Andreea Drăgan,Pedro Ferreira,Pedro Ferreira,Katharina Jahn,Katharina Jahn,Lisa Lamberti,Lisa Lamberti,Martin Pirkl,Martin Pirkl,Susana Posada-Cespedes,Susana Posada-Cespedes,Ivan Topolsky,Ivan Topolsky,Ina Nissen,Natascha Santacroce,Elodie Burcklen,Tobias Schär,Vincenzo Capece,Christiane Beckmann,Olivier Kobel,Christoph Noppen,Maurice Redondo,Sarah Nadeau,Sarah Nadeau,Sophie Seidel,Sophie Seidel,Noemi Santamaria de Souza,Christian Beisel,Tanja Stadler,Tanja Stadler,Niko Beerenwinkel,Niko Beerenwinkel +44 more
TL;DR: The diversity of genetic variants coexisting within patients across a cohort of 3939 publicly accessible samples and 749 recently sequenced samples from Switzerland is examined and it is found that a small number of patients carry most of the diversity, and that patients with more diversity tend to be older.
Posted ContentDOI
Quantifying SARS-CoV-2 spread in Switzerland based on genomic sequencing data
Sarah Nadeau,Sarah Nadeau,Christiane Beckmann,Ivan Topolsky,Ivan Topolsky,Timothy G. Vaughan,Timothy G. Vaughan,Emma B. Hodcroft,Emma B. Hodcroft,Tobias Schaer,Ina Nissen,Natascha Santacroce,Elodie Burcklen,Pedro Ferreira,Pedro Ferreira,Kim Philipp Jablonski,Kim Philipp Jablonski,Susana Posada-Cespedes,Susana Posada-Cespedes,Vincenzo Capece,Sophie Seidel,Sophie Seidel,Noemi Santamaria de Souza,Julia M. Martinez-Gomez,Phil F. Cheng,Philipp P. Bosshard,Mitchell P. Levesque,Verena Kufner,Stefan Schmutz,Maryam Zaheri,Michael Huber,Alexandra Trkola,Samuel Cordey,Florian Laubscher,Ana Rita Gonçalves,Karoline Leuzinger,Karoline Leuzinger,Madlen Stange,Alfredo Mari,Tim Roloff,Helena M.B. Seth-Smith,Hans H. Hirsch,Adrian Egli,Maurice Redondo,Olivier Kobel,Christoph Noppen,Niko Beerenwinkel,Niko Beerenwinkel,Richard A. Neher,Richard A. Neher,Christian Beisel,Tanja Stadler,Tanja Stadler +52 more
TL;DR: It is demonstrated that no one lineage became dominant, pointing against evolution towards general lower virulence, and the framework can be applied to quantify evolution and epidemiology in other locations or for other pathogens based on genomic data.