J
James Breen
Researcher at University of Adelaide
Publications - 92
Citations - 2513
James Breen is an academic researcher from University of Adelaide. The author has contributed to research in topics: Gene & Biology. The author has an hindex of 19, co-authored 70 publications receiving 1788 citations. Previous affiliations of James Breen include University of Zurich & University of South Australia.
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Journal ArticleDOI
Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus
Laura S. Weyrich,Sebastián Duchêne,Julien Soubrier,Luis A. Arriola,Bastien Llamas,James Breen,Alan G. Morris,Kurt W. Alt,David Caramelli,Veit Dresely,Milly Farrell,Andrew G. Farrer,Michael Francken,N. J. Gully,Wolfgang Haak,Karen Hardy,Katerina Harvati,Petra Held,Edward C. Holmes,John A. Kaidonis,Carles Lalueza-Fox,Marco de la Rasilla,Antonio Rosas,Patrick Semal,Arkadiusz Sołtysiak,Grant Townsend,Donatella Usai,Joachim Wahl,Daniel H. Huson,Keith Dobney,Keith Dobney,Keith Dobney,Alan Cooper +32 more
TL;DR: The shotgun-sequencing of ancient DNA from five specimens of Neanderthal calcified dental plaque is described and the characterization of regional differences in Neanderthal ecology is described, suggesting that meat consumption contributed to substantial variation within Neanderthal microbiota.
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Megabase Level Sequencing Reveals Contrasted Organization and Evolution Patterns of the Wheat Gene and Transposable Element Spaces
Frédéric Choulet,Thomas Wicker,Camille Rustenholz,Etienne Paux,Jérôme Salse,Philippe Leroy,Stéphane Schlub,Marie-Christine Le Paslier,Ghislaine Magdelenat,Catherine Gonthier,Arnaud Couloux,Hikmet Budak,James Breen,Michael O. Pumphrey,Sixin Liu,Xiuying Kong,Jizeng Jia,Marta Gut,Dominique Brunel,James A. Anderson,Bikram S. Gill,Rudi Appels,Beat Keller,Catherine Feuillet +23 more
TL;DR: The molecular analysis of large contiguous sequences produced from the bread wheat genome provides novel insights into the number, distribution, and density of genes along chromosome 3B and reveals an unexpectedly high amount of noncollinear genes compared to model grass genomes.
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The maize disease resistance gene Htn1 against northern corn leaf blight encodes a wall-associated receptor-like kinase.
Severine Hurni,Daniela Scheuermann,Simon G. Krattinger,Bettina Kessel,Thomas Wicker,Gerhard Herren,Mirjam N. Fitze,James Breen,Thomas Presterl,Milena Ouzunova,Beat Keller +10 more
TL;DR: The quantitative Htn1 disease resistance in maize is encoded by an unusual innate immune receptor with an extracellular wall-associated kinase domain, highlighting the importance of this protein family in resistance to adapted pathogens.
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An accurate DNA marker assay for stem rust resistance gene Sr2 in wheat
Rohit Mago,Gina Brown-Guedira,Susanne Dreisigacker,James Breen,Yue Jin,Ravi P. Singh,Rudi Appels,Evans Lagudah,J. G. Ellis,Wolfgang Spielmeyer +9 more
TL;DR: A cleaved amplified polymorphic sequence (CAPS) marker is developed that is associated with the presence or absence of the Sr2 gene in 115 of 122 diverse wheat lines and provides breeders with a selection tool for one of the most important disease resistance genes of wheat.
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Laboratory contamination over time during low-biomass sample analysis.
Laura S. Weyrich,Andrew G. Farrer,Raphael Eisenhofer,Luis A. Arriola,Jennifer M. Young,Caitlin A. Selway,Matilda Handsley-Davis,Christina J. Adler,James Breen,Alan Cooper +9 more
TL;DR: A minimum of two strategies are recommended to reduce the impacts of laboratory contaminants within low‐biomass metagenomic studies: (a) extraction blank controls should be included and sequenced with every batch of extractions and (b) the contributions of laboratory contamination should be assessed and reported in each high‐throughput metagenomics study.