J
Janet Hager
Researcher at Yale University
Publications - 9
Citations - 3139
Janet Hager is an academic researcher from Yale University. The author has contributed to research in topics: Gene chip analysis & Regulation of gene expression. The author has an hindex of 8, co-authored 9 publications receiving 3053 citations.
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Journal ArticleDOI
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
Leming Shi,Laura H. Reid,Wendell D. Jones,Richard Shippy,Janet A. Warrington,Shawn C. Baker,Patrick J. Collins,Francoise de Longueville,Ernest S. Kawasaki,Kathleen Y. Lee,Yuling Luo,Yongming Andrew Sun,James C. Willey,Robert Setterquist,Gavin M. Fischer,Weida Tong,Yvonne P. Dragan,David J. Dix,Felix W. Frueh,Federico Goodsaid,Damir Herman,Roderick V. Jensen,Charles D. Johnson,Edward K. Lobenhofer,Raj K. Puri,Uwe Scherf,Jean Thierry-Mieg,Charles Wang,Michael A Wilson,Paul K. Wolber,Lu Zhang,William Slikker,Shashi Amur,Wenjun Bao,Catalin Barbacioru,Anne Bergstrom Lucas,Vincent Bertholet,Cecilie Boysen,Bud Bromley,Donna Brown,Alan Brunner,Roger D. Canales,Xiaoxi Megan Cao,Thomas A. Cebula,James J. Chen,Jing Cheng,Tzu Ming Chu,Eugene Chudin,John F. Corson,J. Christopher Corton,Lisa J. Croner,Christopher Davies,Timothy Davison,Glenda C. Delenstarr,Xutao Deng,David Dorris,Aron Charles Eklund,Xiaohui Fan,Hong Fang,Stephanie Fulmer-Smentek,James C. Fuscoe,Kathryn Gallagher,Weigong Ge,Lei Guo,Xu Guo,Janet Hager,Paul K. Haje,Jing Han,Tao Han,Heather Harbottle,Stephen C. Harris,Eli Hatchwell,Craig A. Hauser,Susan D. Hester,Huixiao Hong,Patrick Hurban,Scott A. Jackson,Hanlee P. Ji,Charles R. Knight,Winston Patrick Kuo,J. Eugene LeClerc,Shawn Levy,Quan Zhen Li,Chunmei Liu,Ying Liu,Michael Lombardi,Yunqing Ma,Scott R. Magnuson,Botoul Maqsodi,Timothy K. McDaniel,Nan Mei,Ola Myklebost,Baitang Ning,Natalia Novoradovskaya,Michael S. Orr,Terry Osborn,Adam Papallo,Tucker A. Patterson,Roger Perkins,Elizabeth Herness Peters,Ron L. Peterson,Kenneth L. Philips,P. Scott Pine,Lajos Pusztai,Feng Qian,Hongzu Ren,Mitch Rosen,Barry A. Rosenzweig,Raymond R. Samaha,Mark Schena,Gary P. Schroth,Svetlana Shchegrova,Dave D. Smith,Frank Staedtler,Zhenqiang Su,Hongmei Sun,Zoltan Szallasi,Zivana Tezak,Danielle Thierry-Mieg,Karol L. Thompson,Irina Tikhonova,Yaron Turpaz,Beena Vallanat,Christophe Van,Stephen J. Walker,Sue Jane Wang,Yonghong Wang,Russell D. Wolfinger,Alexander Wong,Jie Wu,Chunlin Xiao,Qian Xie,Jun Xu,Wen Yang,Liang Zhang,Sheng Zhong,Yaping Zong +136 more
TL;DR: This study describes the experimental design and probe mapping efforts behind the MicroArray Quality Control project and shows intraplatform consistency across test sites as well as a high level of interplatform concordance in terms of genes identified as differentially expressed.
Journal ArticleDOI
Light Control of Arabidopsis Development Entails Coordinated Regulation of Genome Expression and Cellular Pathways
Ligeng Ma,Ligeng Ma,Jinming Li,Li-Jia Qu,Janet Hager,Zhangliang Chen,Hongyu Zhao,Xing Wang Deng,Xing Wang Deng +8 more
TL;DR: It is found that light controls Arabidopsis development through coordinately regulating metabolic and regulatory pathways, and more than 26 cellular pathways that are regulated coordinately by light are revealed.
Journal ArticleDOI
Performance comparison of one-color and two-color platforms within the Microarray Quality Control (MAQC) project
Tucker A. Patterson,Edward K. Lobenhofer,Stephanie Fulmer-Smentek,Patrick J. Collins,Tzu-Ming Chu,Wenjun Bao,Hong Fang,Ernest S. Kawasaki,Janet Hager,Irina Tikhonova,Stephen J. Walker,Liang Zhang,Patrick Hurban,Francoise de Longueville,James C. Fuscoe,Weida Tong,Leming Shi,Russell D. Wolfinger +17 more
TL;DR: Cumulatively, these comparisons indicate that data quality is essentially equivalent between the one- and two-color approaches and strongly suggest that this variable need not be a primary factor in decisions regarding experimental microarray design.
Journal ArticleDOI
Human Macrophage Response to L. (Viannia) panamensis: Microarray Evidence for an Early Inflammatory Response
Carolina Ramírez,Yira Diaz-Toro,Jair Téllez,Tiago Moreno Castilho,Ricardo Rojas,Nicholas Ettinger,Irina Tikhonova,Neal Alexander,Liliana Valderrama,Janet Hager,Mary E. Wilson,Aiping Lin,Hongyu Zhao,Nancy G. Saravia,Diane McMahon-Pratt +14 more
TL;DR: The kinetics and the mRNA abundance profiles induced by L. (Viannia) panamensis illustrate the dynamics of these interactions and the distinct biologic responses to different Leishmania species from the outset of infection within their primary host cell.
Book ChapterDOI
Making and using spotted DNA microarrays in an academic core laboratory.
TL;DR: The aim is to provide a compendium of approaches and protocols to aid those starting out on the core laboratory path and to provide insight into the types of microarray services and studies that are undertaken in this particular academic core laboratory.