J
Jeramia Ory
Researcher at St. Louis College of Pharmacy
Publications - 14
Citations - 1191
Jeramia Ory is an academic researcher from St. Louis College of Pharmacy. The author has contributed to research in topics: Cryptococcus neoformans & Ligand (biochemistry). The author has an hindex of 12, co-authored 14 publications receiving 1076 citations. Previous affiliations of Jeramia Ory include The Commonwealth Medical College & University of Minnesota.
Papers
More filters
Journal ArticleDOI
The khmer software package: enabling efficient nucleotide sequence analysis.
Michael R. Crusoe,Hussien F. Alameldin,Sherine Awad,Elmar Boucher,Adam Caldwell,Reed A. Cartwright,Amanda Charbonneau,Bede Constantinides,Greg Edvenson,Scott Fay,Jacob Fenton,Thomas Fenzl,Jordan A. Fish,Leonor Garcia-Gutierrez,Phillip Garland,Jonathan Gluck,Ivan Gonzalez,Sarah Guermond,Jiarong Guo,Aditi Gupta,Joshua R. Herr,Adina Howe,Alex Hyer,Andreas Härpfer,Luiz Irber,Rhys Kidd,David Lin,Justin Lippi,Tamer A. Mansour,Pamela McA'Nulty,Eric McDonald,Jessica E. Mizzi,Kevin D Murray,Joshua R. Nahum,Kaben G. Nanlohy,Alexander J. Nederbragt,Humberto Ortiz-Zuazaga,Jeramia Ory,Jason Pell,Charles Pepe-Ranney,Zachary N. Russ,Erich M. Schwarz,Camille Scott,Josiah Seaman,Scott Sievert,Jared T. Simpson,Connor T. Skennerton,James S. Spencer,Ramakrishnan Srinivasan,Daniel S. Standage,James A. Stapleton,Susan R. Steinman,Joe Stein,Benjamin R Taylor,Will Trimble,Heather L. Wiencko,Michael Wright,Brian Wyss,Qingpeng Zhang,en zyme,C. Titus Brown +60 more
TL;DR: Khmer as discussed by the authors is a free software library for working efficiently with fixed length DNA words, or k-mers, which provides implementations of a probabilistic k-mer counting data structure, a compressible De Bruijn graph representation, De Bruhen graph partitioning, and digital normalization.
Journal ArticleDOI
A yeast under cover: the capsule of Cryptococcus neoformans.
TL;DR: This review focuses on the resulting advances in the understanding of the structure and synthesis of the capsular components, the incorporation of these components into the existing capsular network, the association between the capsule and the cell wall, and the regulation of capsule growth.
Journal ArticleDOI
Remediation of the protein data bank archive
Kim Henrick,Zukang Feng,Wolfgang F. Bluhm,Dimitris Dimitropoulos,Jurgen F. Doreleijers,Shuchismita Dutta,Judith L. Flippen-Anderson,John Ionides,Chisa Kamada,Eugene Krissinel,Catherine L. Lawson,John L. Markley,Haruki Nakamura,Richard H. Newman,Yukiko Shimizu,G. Jawahar Swaminathan,Sameer Velankar,Jeramia Ory,Eldon L. Ulrich,Wim F. Vranken,John D. Westbrook,Reiko Yamashita,Huanwang Yang,Jasmine Young,Muhammed Yousufuddin,Helen M. Berman +25 more
TL;DR: The members of the wwPDB–RCSB PDB (USA), MSD-EBI (Europe), PDBj (Japan) and BMRB (USA)–have remediated this archive to address inconsistencies that have been introduced over the years.
Journal ArticleDOI
Physiological consequences of DnaK and DnaJ overproduction in Escherichia coli.
TL;DR: DnaK overproduction was found to be bacteriocidal, and this effect was also partially suppressed by DnaJ, indicating that DnaK toxicity is growth phase dependent.
Journal ArticleDOI
An efficiently regulated promoter system for Cryptococcus neoformans utilizing the CTR4 promoter
TL;DR: These plasmids incorporating upstream elements of the C. neoformans copper transporter gene CTR4 mediate high‐level expression of a reporter protein in response to copper deprivation, and demonstrate excellent expression in serotype A, contrasting with other available promoters.