J
Jie Arro
Researcher at University of Illinois at Urbana–Champaign
Publications - 9
Citations - 1126
Jie Arro is an academic researcher from University of Illinois at Urbana–Champaign. The author has contributed to research in topics: Saccharum officinarum & Gene. The author has an hindex of 8, co-authored 9 publications receiving 831 citations.
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Journal ArticleDOI
Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.
Jisen Zhang,Xingtan Zhang,Haibao Tang,Qing Zhang,Xiuting Hua,Xiaokai Ma,Fan Zhu,Tyler Jones,Xin-Guang Zhu,John E. Bowers,Ching Man Wai,Chunfang Zheng,Yan Shi,Shuai Chen,Xiuming Xu,Jingjing Yue,David R. Nelson,Lixian Huang,Zhen Li,Huimin Xu,Dong Zhou,Yongjun Wang,Weichang Hu,Jishan Lin,Youjin Deng,Neha Pandey,Melina Cristina Mancini,Dessireé Zerpa,Julie K. Nguyen,Liming Wang,Liang Yu,Yinghui Xin,Liangfa Ge,Jie Arro,Jennifer Han,Setu Chakrabarty,Marija Pushko,Wenping Zhang,Yanhong Ma,Panpan Ma,Mingju Lv,Faming Chen,Guangyong Zheng,Jingsheng Xu,Zhenhui Yang,Fang Deng,Xuequn Chen,Zhenyang Liao,Xunxiao Zhang,Zhicong Lin,Hai Lin,Hansong Yan,Zheng Kuang,Weimin Zhong,Pingping Liang,Guofeng Wang,Yuan Yuan,Jiaxian Shi,Jinxiang Hou,Jingxian Lin,Jingjing Jin,Peijian Cao,Qiaochu Shen,Qing Jiang,Ping Zhou,Yaying Ma,Xiaodan Zhang,Rongrong Xu,Juan Liu,Yongmei Zhou,Haifeng Jia,Qing Ma,Rui Qi,Zhiliang Zhang,Jingping Fang,Hongkun Fang,Jinjin Song,Mengjuan Wang,Guangrui Dong,Gang Wang,Zheng Chen,Teng Ma,Hong Liu,Singha R. Dhungana,Sarah E. Huss,Xiping Yang,Anupma Sharma,Jhon H. Trujillo,Maria C. Martinez,Matthew E. Hudson,John J. Riascos,Mary A. Schuler,Li Qing Chen,David M. Braun,Lei Li,Qingyi Yu,Jianping Wang,Jianping Wang,Kai Wang,Michael C. Schatz,David Heckerman,Marie-Anne Van Sluys,Glaucia Mendes Souza,Paul H. Moore,David Sankoff,Robert VanBuren,Andrew H. Paterson,Chifumi Nagai,Ray Ming,Ray Ming +109 more
TL;DR: In this article, a haplotype of S. spontaneum, AP85-441, facilitated the assembly of 32 pseudo-chromosomes comprising 8 homologous groups of 4 members each, bearing 35,525 genes with alleles defined.
Journal ArticleDOI
Genome of the long-living sacred lotus ( Nelumbo nucifera Gaertn.)
Ray Ming,Ray Ming,Robert VanBuren,Yanling Liu,Mei Yang,Yuepeng Han,Leiting Li,Leiting Li,Qiong Zhang,Qiong Zhang,Min-Jeong Kim,Michael C. Schatz,Michael S. Campbell,Jingping Li,John E. Bowers,Haibao Tang,Eric Lyons,Ann A. Ferguson,Giuseppe Narzisi,David R. Nelson,Crysten E. Blaby-Haas,Andrea R. Gschwend,Yuannian Jiao,Yuannian Jiao,Joshua P. Der,Fanchang Zeng,Jennifer Han,Xiang Jia Min,Karen A. Hudson,Ratnesh Singh,Aleel K. Grennan,Steven J. Karpowicz,Jennifer R. Watling,Kikukatsu Ito,Sharon A. Robinson,Matthew E. Hudson,Qingyi Yu,Todd C. Mockler,Andrew Carroll,Yun Zheng,Ramanjulu Sunkar,Ruizong Jia,Nancy Jung Chen,Jie Arro,Ching Man Wai,Eric K. Wafula,Ashley K. Spence,Yanni Han,Liming Xu,Jisen Zhang,Rhiannon M. Peery,Miranda J. Haus,Wenwei Xiong,James A. Walsh,Jun Wu,Ming Li Wang,Yun J. Zhu,Robert E. Paull,Anne B. Britt,Chunguang Du,Stephen R. Downie,Mary A. Schuler,Todd P. Michael,Steve Long,Donald R. Ort,Donald R. Ort,J. William Schopf,J. William Schopf,David R. Gang,Ning Jiang,Mark Yandell,Claude W. dePamphilis,Sabeeha S. Merchant,Andrew H. Paterson,Bob B. Buchanan,Shaohua Li,Jane Shen-Miller +76 more
TL;DR: In this article, the China Antique variety of the sacred lotus was sequenced with Illumina and 454 technologies, at respective depths of 101× and 5.2×, and the final assembly has a contig N50 of 38.8 kbp and a scaffold n50 of 3.4 Mbp, covering 86.5% of the estimated 929 Mbp total genome size.
Journal ArticleDOI
Nelumbo nucifera [data set]
Ray Ming,Robert VanBuren,Yanling Liu,Mei Yang,Yuepeng Han,Leiting Li,Qiong Zhang,Min-Jeong Kim,Michael C. Schatz,Michael J. Campbell,Jingping Li,John E. Bowers,Haibao Tang,Eric Lyons,Ann A. Ferguson,Giuseppe Narzisi,David R. Nelson,Crysten E. Blaby-Haas,Andrea R. Gschwend,Yuannian Jiao,Joshua P. Der,Fanchang Zeng,Jennifer Han,Jia Min Xiang,Karen A. Hudson,Ratnesh Singh,Aleel K. Grennan,Steven J. Karpowicz,Jennifer R. Watling,Kikukatsu Ito,Sharon A. Robinson,Matthew E. Hudson,Qingyi Yu,Todd C. Mockler,Andrew Carroll,Yun Zheng,Ramanjulu Sunkar,Ruizong Jia,Nancy Jung Chen,Jie Arro,Ching Man Wai,Eric K. Wafula,Ashley K. Spence,Yanni Han,Liming Xu,Jisen Zhang,Rhiannon M. Peery,Miranda J. Haus,Wenwei Xiong,James A. Walsh,Jun Wu,Ming-Li Wang,Yun J. Zhu,Robert E. Paull,Anne B. Britt,Chunguang Du,Stephen R. Downie,Mary A. Schuler,Todd P. Michael,Steve Long,Donald R. Ort,J. William Schopf,David R. Gang,Ning Jiang,Mark Yandell,Claude W. dePamphilis,Sabeeha S. Merchant,Andrew H. Paterson,Bob B. Buchanan,Shaohua Li,Jane Shen-Miller +70 more
Journal ArticleDOI
Origin and domestication of papaya Yh chromosome
Robert VanBuren,Robert VanBuren,Fanchang Zeng,Cuixia Chen,Jisen Zhang,Ching Man Wai,Jennifer Han,Rishi Aryal,Andrea R. Gschwend,Jianping Wang,Jong Kuk Na,Lixian Huang,Lingmao Zhang,Wenjing Miao,Jiqing Gou,Jie Arro,Romain Guyot,Richard C. Moore,Ming Li Wang,Francis Zee,Deborah Charlesworth,Paul H. Moore,Qingyi Yu,Ray Ming,Ray Ming +24 more
TL;DR: The identification of the ancestral MSY3 haplotype will expedite investigation of the mutation leading to the domestication of the hermaphrodite Y(h) chromosome, and should identify the gene that was affected by the carpel-suppressing mutation that was involved in the evolution of males.
Journal ArticleDOI
Haplotype analysis of sucrose synthase gene family in three Saccharum species
TL;DR: The five members of the SuSy gene family evolved before the divergence of the genera in the tribe Andropogoneae at least 12 MYA and provide fundamental information for designing strategies to sequence these autopolyploid genomes.