M
Matthew E. Hudson
Researcher at University of Illinois at Urbana–Champaign
Publications - 106
Citations - 8142
Matthew E. Hudson is an academic researcher from University of Illinois at Urbana–Champaign. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 39, co-authored 98 publications receiving 7008 citations. Previous affiliations of Matthew E. Hudson include Wisconsin Alumni Research Foundation & Verenium Corporation.
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Journal ArticleDOI
Copy Number Variation of Multiple Genes at Rhg1 Mediates Nematode Resistance in Soybean
David Cook,Tong Geon Lee,Xiaoli Guo,Sara Melito,Kai Wang,Adam M. Bayless,Jianping Wang,T. J. Hughes,David K. Willis,Thomas E. Clemente,Brian W. Diers,Jiming Jiang,Matthew E. Hudson,Andrew F. Bent +13 more
TL;DR: Gene silencing showed that genes in a 31-kilobase segment at rhg1-b, encoding an amino acid transporter, an α-SNAP protein, and a WI12 (wound-inducible domain) protein, each contribute to resistance against soybean cyst nematode.
Journal ArticleDOI
Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis.
TL;DR: PIF1 interacts specifically with the photoactivated conformer of phytochromes A and B, suggesting a signaling pathway by which chlorophyll biosynthetic rates are tightly controlled during the critical initial emergence of seedlings from subterranean darkness into sunlight.
Journal ArticleDOI
Sequencing breakthroughs for genomic ecology and evolutionary biology.
TL;DR: Next‐generation sequencing technologies provide practical, massively parallel sequencing at lower cost and without the requirement for large, automated facilities, making genome and transcriptome sequencing and resequencing possible for more projects and more species.
Journal ArticleDOI
Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.
Jisen Zhang,Xingtan Zhang,Haibao Tang,Qing Zhang,Xiuting Hua,Xiaokai Ma,Fan Zhu,Tyler Jones,Xin-Guang Zhu,John E. Bowers,Ching Man Wai,Chunfang Zheng,Yan Shi,Shuai Chen,Xiuming Xu,Jingjing Yue,David R. Nelson,Lixian Huang,Zhen Li,Huimin Xu,Dong Zhou,Yongjun Wang,Weichang Hu,Jishan Lin,Youjin Deng,Neha Pandey,Melina Cristina Mancini,Dessireé Zerpa,Julie K. Nguyen,Liming Wang,Liang Yu,Yinghui Xin,Liangfa Ge,Jie Arro,Jennifer Han,Setu Chakrabarty,Marija Pushko,Wenping Zhang,Yanhong Ma,Panpan Ma,Mingju Lv,Faming Chen,Guangyong Zheng,Jingsheng Xu,Zhenhui Yang,Fang Deng,Xuequn Chen,Zhenyang Liao,Xunxiao Zhang,Zhicong Lin,Hai Lin,Hansong Yan,Zheng Kuang,Weimin Zhong,Pingping Liang,Guofeng Wang,Yuan Yuan,Jiaxian Shi,Jinxiang Hou,Jingxian Lin,Jingjing Jin,Peijian Cao,Qiaochu Shen,Qing Jiang,Ping Zhou,Yaying Ma,Xiaodan Zhang,Rongrong Xu,Juan Liu,Yongmei Zhou,Haifeng Jia,Qing Ma,Rui Qi,Zhiliang Zhang,Jingping Fang,Hongkun Fang,Jinjin Song,Mengjuan Wang,Guangrui Dong,Gang Wang,Zheng Chen,Teng Ma,Hong Liu,Singha R. Dhungana,Sarah E. Huss,Xiping Yang,Anupma Sharma,Jhon H. Trujillo,Maria C. Martinez,Matthew E. Hudson,John J. Riascos,Mary A. Schuler,Li Qing Chen,David M. Braun,Lei Li,Qingyi Yu,Jianping Wang,Jianping Wang,Kai Wang,Michael C. Schatz,David Heckerman,Marie-Anne Van Sluys,Glaucia Mendes Souza,Paul H. Moore,David Sankoff,Robert VanBuren,Andrew H. Paterson,Chifumi Nagai,Ray Ming,Ray Ming +109 more
TL;DR: In this article, a haplotype of S. spontaneum, AP85-441, facilitated the assembly of 32 pseudo-chromosomes comprising 8 homologous groups of 4 members each, bearing 35,525 genes with alleles defined.
Journal ArticleDOI
Finding the missing honey bee genes: Lessons learned from a genome upgrade
Christine G. Elsik,Christine G. Elsik,Kim C. Worley,Anna K. Bennett,Martin Beye,Francisco Camara,Christopher P. Childers,Christopher P. Childers,Dirk C. de Graaf,Griet Debyser,Jixin Deng,Bart Devreese,Eran Elhaik,Jay D. Evans,Leonard J. Foster,Dan Graur,Roderic Guigó,Katharina J. Hoff,Michael Holder,Matthew E. Hudson,Greg J. Hunt,Huaiyang Jiang,Vandita Joshi,Radhika S. Khetani,Peter Kosarev,Christie Kovar,Jian Ma,Ryszard Maleszka,Robin F. A. Moritz,Monica Munoz-Torres,Monica Munoz-Torres,Terence Murphy,Donna M. Muzny,Irene Newsham,Justin T. Reese,Justin T. Reese,Hugh M. Robertson,Gene E. Robinson,Olav Rueppell,Victor V. Solovyev,Mario Stanke,Eckart Stolle,Jennifer M. Tsuruda,Matthias Van Vaerenbergh,Robert M. Waterhouse,Daniel B. Weaver,Charles W. Whitfield,Yuanqing Wu,Evgeny M. Zdobnov,Lan Zhang,Dianhui Zhu,Richard A. Gibbs +51 more
TL;DR: Improved honey bee genome assembly with a new gene annotation set and a number of genes similar to that of other insect genomes are reported, contrary to what was suggested in OGSv1.0.