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Robert VanBuren
Researcher at Michigan State University
Publications - 98
Citations - 5369
Robert VanBuren is an academic researcher from Michigan State University. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 28, co-authored 82 publications receiving 3709 citations. Previous affiliations of Robert VanBuren include Donald Danforth Plant Science Center & Fujian Agriculture and Forestry University.
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Journal ArticleDOI
The coffee genome provides insight into the convergent evolution of caffeine biosynthesis
Lorenzo Carretero-Paulet,Alexis Dereeper,Gaëtan Droc,Romain Guyot,Marco Pietrella,Chunfang Zheng,Adriana Alberti,François Anthony,G. Aprea,Jean-Marc Aury,Pascal Bento,Maria Bernard,Stéphanie Bocs,Claudine Campa,Alberto Cenci,Alberto Cenci,Marie Christine Combes,Dominique Crouzillat,Corinne Da Silva,Loretta Daddiego,Fabien De Bellis,Stéphane Dussert,Olivier Garsmeur,Thomas Gayraud,Valentin Guignon,Katharina Jahn,Katharina Jahn,Véronique Jamilloux,Thierry Joët,Karine Labadie,Tianying Lan,Tianying Lan,Julie Leclercq,Maud Lepelley,Thierry Leroy,Leiting Li,Pablo Librado,Loredana Lopez,Adriana Muñoz,Adriana Muñoz,Benjamin Noel,Alberto Pallavicini,Gaetano Perrotta,Valérie Poncet,David Pot,Priyono,Michel Rigoreau,Mathieu Rouard,Julio Rozas,Christine Tranchant-Dubreuil,Robert VanBuren,Qiong Zhang,Alan Carvalho Andrade,Xavier Argout,Benoît Bertrand,Alexandre de Kochko,Giorgio Graziosi,Giorgio Graziosi,Robert J Henry,Jayarama,Ray Ming,Chifumi Nagai,Steve Rounsley,David Sankoff,Giovanni Giuliano,Victor A. Albert,Patrick Wincker,Patrick Wincker,Patrick Wincker,Philippe Lashermes +69 more
TL;DR: The Coffea canephora (coffee) genome was sequenced and identified a conserved gene order, and comparative analyses of caffeine NMTs demonstrate that these genes expanded through sequential tandem duplications independently of genes from cacao and tea, suggesting that caffeine in eudicots is of polyphyletic origin.
Journal ArticleDOI
The pineapple genome and the evolution of CAM photosynthesis
Ray Ming,Ray Ming,Robert VanBuren,Robert VanBuren,Robert VanBuren,Ching Man Wai,Ching Man Wai,Haibao Tang,Haibao Tang,Michael C. Schatz,John E. Bowers,Eric Lyons,Ming Li Wang,Jung Chen,Eric Biggers,Jisen Zhang,Lixian Huang,Lingmao Zhang,Wenjing Miao,Jian Zhang,Zhangyao Ye,Chenyong Miao,Zhicong Lin,Hao Wang,Hongye Zhou,Won Cheol Yim,Henry D. Priest,Chunfang Zheng,Margaret R. Woodhouse,Patrick P. Edger,Romain Guyot,Hao-Bo Guo,Hong Guo,Guangyong Zheng,Ratnesh Singh,Anupma Sharma,Xiang Jia Min,Yun Zheng,Hayan Lee,James Gurtowski,Fritz J. Sedlazeck,Alex Harkess,Michael R. McKain,Zhenyang Liao,Jingping Fang,Juan Liu,Xiaodan Zhang,Qing Zhang,Weichang Hu,Yuan Qin,Kai Wang,Li Yu Chen,Neil J. Shirley,Yann-Rong Lin,Li Yu Liu,Alvaro G. Hernandez,Chris L. Wright,Vincent Bulone,Gerald A. Tuskan,Katy D. Heath,Francis Zee,Paul H. Moore,Ramanjulu Sunkar,Jim Leebens-Mack,Todd C. Mockler,Jeffrey L. Bennetzen,Michael Freeling,David Sankoff,Andrew H. Paterson,Xin-Guang Zhu,Xiaohan Yang,J. Andrew C. Smith,John C. Cushman,Robert E. Paull,Qingyi Yu +74 more
TL;DR: The pineapple lineage has transitioned from C3 photosynthesis to CAM, with CAM-related genes exhibiting a diel expression pattern in photosynthetic tissues, providing the first cis-regulatory link between CAM and circadian clock regulation.
Journal ArticleDOI
Origin and evolution of the octoploid strawberry genome.
Patrick P. Edger,Thomas J. Poorten,Robert VanBuren,Michael A. Hardigan,Marivi Colle,Michael R. McKain,Ronald D. Smith,Scott J. Teresi,Andrew D. L. Nelson,Ching Man Wai,Elizabeth I. Alger,Kevin A. Bird,Alan E. Yocca,Nathan Pumplin,Shujun Ou,Gil Ben-Zvi,Avital Brodt,Kobi Baruch,Thomas Swale,Lily Shiue,Charlotte B. Acharya,Glenn S. Cole,Jeffrey P. Mower,Kevin L. Childs,Ning Jiang,Eric Lyons,Michael Freeling,Joshua R. Puzey,Steven J. Knapp +28 more
TL;DR: A near-complete chromosome-scale assembly for cultivated octoploid strawberry (Fragaria × ananassa) is reported and the origin and evolutionary processes that shaped this complex allopolyploid are uncovered, providing a useful resource for genome-wide analyses and molecular breeding.
Journal ArticleDOI
Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.
Jisen Zhang,Xingtan Zhang,Haibao Tang,Qing Zhang,Xiuting Hua,Xiaokai Ma,Fan Zhu,Tyler Jones,Xin-Guang Zhu,John E. Bowers,Ching Man Wai,Chunfang Zheng,Yan Shi,Shuai Chen,Xiuming Xu,Jingjing Yue,David R. Nelson,Lixian Huang,Zhen Li,Huimin Xu,Dong Zhou,Yongjun Wang,Weichang Hu,Jishan Lin,Youjin Deng,Neha Pandey,Melina Cristina Mancini,Dessireé Zerpa,Julie K. Nguyen,Liming Wang,Liang Yu,Yinghui Xin,Liangfa Ge,Jie Arro,Jennifer Han,Setu Chakrabarty,Marija Pushko,Wenping Zhang,Yanhong Ma,Panpan Ma,Mingju Lv,Faming Chen,Guangyong Zheng,Jingsheng Xu,Zhenhui Yang,Fang Deng,Xuequn Chen,Zhenyang Liao,Xunxiao Zhang,Zhicong Lin,Hai Lin,Hansong Yan,Zheng Kuang,Weimin Zhong,Pingping Liang,Guofeng Wang,Yuan Yuan,Jiaxian Shi,Jinxiang Hou,Jingxian Lin,Jingjing Jin,Peijian Cao,Qiaochu Shen,Qing Jiang,Ping Zhou,Yaying Ma,Xiaodan Zhang,Rongrong Xu,Juan Liu,Yongmei Zhou,Haifeng Jia,Qing Ma,Rui Qi,Zhiliang Zhang,Jingping Fang,Hongkun Fang,Jinjin Song,Mengjuan Wang,Guangrui Dong,Gang Wang,Zheng Chen,Teng Ma,Hong Liu,Singha R. Dhungana,Sarah E. Huss,Xiping Yang,Anupma Sharma,Jhon H. Trujillo,Maria C. Martinez,Matthew E. Hudson,John J. Riascos,Mary A. Schuler,Li Qing Chen,David M. Braun,Lei Li,Qingyi Yu,Jianping Wang,Jianping Wang,Kai Wang,Michael C. Schatz,David Heckerman,Marie-Anne Van Sluys,Glaucia Mendes Souza,Paul H. Moore,David Sankoff,Robert VanBuren,Andrew H. Paterson,Chifumi Nagai,Ray Ming,Ray Ming +109 more
TL;DR: In this article, a haplotype of S. spontaneum, AP85-441, facilitated the assembly of 32 pseudo-chromosomes comprising 8 homologous groups of 4 members each, bearing 35,525 genes with alleles defined.
Journal ArticleDOI
Genome of the long-living sacred lotus ( Nelumbo nucifera Gaertn.)
Ray Ming,Ray Ming,Robert VanBuren,Yanling Liu,Mei Yang,Yuepeng Han,Leiting Li,Leiting Li,Qiong Zhang,Qiong Zhang,Min-Jeong Kim,Michael C. Schatz,Michael S. Campbell,Jingping Li,John E. Bowers,Haibao Tang,Eric Lyons,Ann A. Ferguson,Giuseppe Narzisi,David R. Nelson,Crysten E. Blaby-Haas,Andrea R. Gschwend,Yuannian Jiao,Yuannian Jiao,Joshua P. Der,Fanchang Zeng,Jennifer Han,Xiang Jia Min,Karen A. Hudson,Ratnesh Singh,Aleel K. Grennan,Steven J. Karpowicz,Jennifer R. Watling,Kikukatsu Ito,Sharon A. Robinson,Matthew E. Hudson,Qingyi Yu,Todd C. Mockler,Andrew Carroll,Yun Zheng,Ramanjulu Sunkar,Ruizong Jia,Nancy Jung Chen,Jie Arro,Ching Man Wai,Eric K. Wafula,Ashley K. Spence,Yanni Han,Liming Xu,Jisen Zhang,Rhiannon M. Peery,Miranda J. Haus,Wenwei Xiong,James A. Walsh,Jun Wu,Ming Li Wang,Yun J. Zhu,Robert E. Paull,Anne B. Britt,Chunguang Du,Stephen R. Downie,Mary A. Schuler,Todd P. Michael,Steve Long,Donald R. Ort,Donald R. Ort,J. William Schopf,J. William Schopf,David R. Gang,Ning Jiang,Mark Yandell,Claude W. dePamphilis,Sabeeha S. Merchant,Andrew H. Paterson,Bob B. Buchanan,Shaohua Li,Jane Shen-Miller +76 more
TL;DR: In this article, the China Antique variety of the sacred lotus was sequenced with Illumina and 454 technologies, at respective depths of 101× and 5.2×, and the final assembly has a contig N50 of 38.8 kbp and a scaffold n50 of 3.4 Mbp, covering 86.5% of the estimated 929 Mbp total genome size.