Johannes Alneberg

TL;DR: ConCOCT, a new algorithm that combines sequence composition and coverage across multiple samples, to automatically cluster contigs into genomes is presented, demonstrating high recall and precision on artificial as well as real human gut metagenome data sets.

TL;DR: The nf-core framework is introduced as a means for the development of collaborative, peerreviewed, best-practice analysis pipelines that can be used across all institutions and research facilities and introduces a higher degree of portability as compared to custom in-house scripts.

TL;DR: It is proposed that brackish environments exert such strong selection that lineages adapted to them flourish globally with limited influence from surrounding aquatic communities.

TL;DR: This work validated DESMAN on a complex 50-species 210-genome 96-sample synthetic mock data set and then applied it to the Tara Oceans microbiome, proving its ability to resolve strain-level variation.

TL;DR: Almost 100 CAZyme-annotated genomes reconstructed in this study provide an in-depth view of an efficient lignocellulose-degrading microbiome and prospects for developing enzyme technology for biorefineries.