J
John J. Trombetta
Researcher at Broad Institute
Publications - 28
Citations - 22539
John J. Trombetta is an academic researcher from Broad Institute. The author has contributed to research in topics: Single-cell analysis & Immune system. The author has an hindex of 18, co-authored 28 publications receiving 17801 citations.
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Journal ArticleDOI
Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons
Naomi Habib,Naomi Habib,Yinqing Li,Matthias Heidenreich,Matthias Heidenreich,Lukasz Swiech,Lukasz Swiech,Inbal Avraham-Davidi,John J. Trombetta,Cynthia C. Hession,Feng Zhang,Aviv Regev,Aviv Regev +12 more
TL;DR: Div-Sequ is developed, which combines scalable single-nucleus RNA-Seq (sNuc-Sepp) with pulse labeling of proliferating cells by 5-ethynyl-2′-deoxyuridine (EdU) to profile individual dividing cells and open the way for unbiased analysis of diverse complex tissues.
Journal ArticleDOI
The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation
Antonia Wallrapp,Samantha J. Riesenfeld,Patrick R. Burkett,Raja-Elie E. Abdulnour,Jackson Nyman,Danielle Dionne,Matan Hofree,Michael S. Cuoco,Christopher Rodman,Daneyal Farouq,Brian J. Haas,Timothy L. Tickle,John J. Trombetta,Pankaj Baral,Christoph S.N. Klose,Tanel Mahlakõiv,David Artis,Orit Rozenblatt-Rosen,Isaac M. Chiu,Bruce D. Levy,Monika S. Kowalczyk,Aviv Regev,Aviv Regev,Vijay K. Kuchroo,Vijay K. Kuchroo +24 more
TL;DR: In this paper, the authors profiled mouse lung-resident ILCs using single-cell RNA sequencing at steady state and after in vivo stimulation with the alarmin cytokines IL-25 and IL-33.
Journal ArticleDOI
Deconstructing transcriptional heterogeneity in pluripotent stem cells
Roshan M. Kumar,Patrick Cahan,Alex K. Shalek,Rahul Satija,AJay DaleyKeyser,Hu Li,Jin Zhang,Keith Pardee,Keith Pardee,David Gennert,John J. Trombetta,Thomas C. Ferrante,Aviv Regev,Aviv Regev,George Q. Daley,James J. Collins,James J. Collins +16 more
TL;DR: In this paper, the authors characterize transcriptional heterogeneity in Pluripotent Stem Cells (PSCs) by single-cell single-input single-out (SISO) experiments.
Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons
Inbal Avraham-Davidi,John J. Trombetta,Cynthia C. Hession,Naomi Habib,Yinqing Li,Matthias Heidenreich,Lukasz Swiech,Feng Zhang,Aviv Regev +8 more
TL;DR: Div-Seq as mentioned in this paper combines scalable single-nucleus RNA sequencing with pulse labeling of proliferating cells by 5-ethynyl-2′-deoxyuridine (EdU) to profile individual dividing cells.
Journal ArticleDOI
Preparation of Single‐Cell RNA‐Seq Libraries for Next Generation Sequencing
TL;DR: This unit describes a method that merges several important technologies to produce, in high‐throughput, single‐cell RNA‐Seq libraries, the heterogeneity that exists within these populations of transcriptomics.