J
José M. Jiménez-Gómez
Researcher at Université Paris-Saclay
Publications - 55
Citations - 3463
José M. Jiménez-Gómez is an academic researcher from Université Paris-Saclay. The author has contributed to research in topics: Population & Arabidopsis. The author has an hindex of 26, co-authored 52 publications receiving 2617 citations. Previous affiliations of José M. Jiménez-Gómez include Agro ParisTech & University of California, Davis.
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Journal ArticleDOI
The genome of the stress-tolerant wild tomato species Solanum pennellii
Anthony Bolger,Federico Scossa,Marie E. Bolger,Christa Lanz,Florian Maumus,Takayuki Tohge,Hadi Quesneville,Saleh Alseekh,Iben Sørensen,Gabriel Lichtenstein,Eric A. Fich,Mariana Conte,Heike Keller,Korbinian Schneeberger,Rainer Schwacke,Itai Ofner,Julia Vrebalov,Yimin Xu,Sonia Osorio,Saulo Alves Aflitos,Elio Schijlen,José M. Jiménez-Gómez,Małgorzata Ryngajłło,Seisuke Kimura,Ravi Kumar,Daniel Koenig,Lauren R. Headland,Julin N. Maloof,Neelima Sinha,Roeland C. H. J. van Ham,René Klein Lankhorst,Linyong Mao,Alexander Vogel,Borjana Arsova,Ralph Panstruga,Zhangjun Fei,Jocelyn K. C. Rose,Dani Zamir,Fernando Carrari,James J. Giovannoni,Detlef Weigel,Björn Usadel,Alisdair R. Fernie +42 more
TL;DR: A high-quality genome assembly of the parents of the IL population of S. pennellii is described, defining candidate genes for stress tolerance and providing evidence that transposable elements had a role in the evolution of these traits.
Journal ArticleDOI
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato
Daniel Koenig,José M. Jiménez-Gómez,Seisuke Kimura,Daniel Fulop,Daniel H. Chitwood,Lauren R. Headland,Ravi Kumar,Michael F. Covington,Upendra K. Devisetty,An V. Tat,Takayuki Tohge,Anthony Bolger,Korbinian Schneeberger,Stephan Ossowski,Christa Lanz,Guangyan Xiong,Mallorie Taylor-Teeples,Siobhan M. Brady,Markus Pauly,Detlef Weigel,Björn Usadel,Alisdair R. Fernie,Jie Peng,Neelima Sinha,Julin N. Maloof +24 more
TL;DR: High-throughput sequencing is used to identify changes in DNA sequence and gene expression that differentiate cultivated tomato and its wild relatives and identifies hundreds of candidate genes that have evolved new protein sequences or have changed expression levels in response to natural selection in wild tomato relatives.
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Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato
Sebastian Soyk,Niels A. Müller,Soon Ju Park,Inga Schmalenbach,Ke Jiang,Ryosuke Hayama,Lei Zhang,Joyce Van Eck,José M. Jiménez-Gómez,José M. Jiménez-Gómez,Zachary B. Lippman +10 more
TL;DR: It is shown that loss of day-length-sensitive flowering in tomato was driven by the florigen paralog and flowering repressor SELF-PRUNING 5G (SP5G), and the findings suggest that pre-existing variation in SP5G facilitated the expansion of cultivated tomato beyond its origin near the equator in South America.
Journal ArticleDOI
A Quantitative Genetic Basis for Leaf Morphology in a Set of Precisely Defined Tomato Introgression Lines
Daniel H. Chitwood,Ravi Kumar,Lauren R. Headland,Aashish Ranjan,Michael F. Covington,Yasunori Ichihashi,Daniel Fulop,José M. Jiménez-Gómez,Jie Peng,Julin N. Maloof,Neelima Sinha +10 more
TL;DR: The genotype of an IL population derived from the wild desert tomato Solanum pennellii at ultrahigh density is provided, providing the exact gene content harbored by each line, and meta-analysis of previously measured traits shows an unexpected relationship between leaf morphology and fruit sugar levels.
Journal ArticleDOI
Domestication selected for deceleration of the circadian clock in cultivated tomato
Niels A. Müller,Cris L Wijnen,Cris L Wijnen,Arunkumar Srinivasan,Małgorzata Ryngajłło,Itai Ofner,Tao Lin,Aashish Ranjan,Donnelly A. West,Julin N. Maloof,Neelima Sinha,Sanwen Huang,Dani Zamir,José M. Jiménez-Gómez,José M. Jiménez-Gómez +14 more
TL;DR: It is shown that the circadian clock of cultivated tomato (Solanum lycopersicum) has slowed during domestication, and the EID1 allele in cultivated tomatoes enhances plant performance specifically under long day photoperiods, suggesting that humans selected slower circadian rhythms to adapt the cultivated species to the long summer days it encountered as it was moved away from the equator.