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Justin D. Silverman

Researcher at Pennsylvania State University

Publications -  51
Citations -  3936

Justin D. Silverman is an academic researcher from Pennsylvania State University. The author has contributed to research in topics: Gut flora & Microbiome. The author has an hindex of 16, co-authored 39 publications receiving 2180 citations. Previous affiliations of Justin D. Silverman include Penn State College of Information Sciences and Technology & Duke University.

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Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England.

TL;DR: Using a variety of statistical and dynamic modeling approaches, the authors estimate that this variant has a 43 to 90% (range of 95% credible intervals, 38 to 130%) higher reproduction number than preexisting variants, and a fitted two-strain dynamic transmission model shows that VOC 202012/01 will lead to large resurgences of COVID-19 cases.
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Establishing microbial composition measurement standards with reference frames

TL;DR: The notion of “reference frames” is defined, which provide deep intuition about the compositional nature of microbiome data, which allow reassessment of published relative abundance data to reveal reproducible microbial changes from standard sequencing output without the need for new assays.
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A phylogenetic transform enhances analysis of compositional microbiota data

TL;DR: The PhILR transform is introduced, which incorporates microbial evolutionary models with the isometric log-ratio transform to allow off-the-shelf statistical tools to be safely applied to microbiota surveys and demonstrates that analyses of community-level structure can be applied toPhILR transformed data with performance on benchmarks rivaling or surpassing standard tools.