J
Justin D. Silverman
Researcher at Pennsylvania State University
Publications - 51
Citations - 3936
Justin D. Silverman is an academic researcher from Pennsylvania State University. The author has contributed to research in topics: Gut flora & Microbiome. The author has an hindex of 16, co-authored 39 publications receiving 2180 citations. Previous affiliations of Justin D. Silverman include Penn State College of Information Sciences and Technology & Duke University.
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Journal ArticleDOI
Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England.
Nicholas G Davies,Sam Abbott,Rosanna C. Barnard,Christopher I Jarvis,Adam J. Kucharski,James D Munday,Carl A. B. Pearson,Timothy W Russell,Damien C. Tully,Alex D. Washburne,Tom Wenseleers,Amy Gimma,William Waites,Kerry L. M. Wong,Kevin van Zandvoort,Justin D. Silverman,Karla Diaz-Ordaz,Ruth H. Keogh,Rosalind M Eggo,Sebastian Funk,Mark Jit,Katherine E. Atkins,Katherine E. Atkins,W. John Edmunds +23 more
TL;DR: Using a variety of statistical and dynamic modeling approaches, the authors estimate that this variant has a 43 to 90% (range of 95% credible intervals, 38 to 130%) higher reproduction number than preexisting variants, and a fitted two-strain dynamic transmission model shows that VOC 202012/01 will lead to large resurgences of COVID-19 cases.
Journal ArticleDOI
Establishing microbial composition measurement standards with reference frames
James T. Morton,Clarisse Marotz,Alex D. Washburne,Justin D. Silverman,Livia S. Zaramela,Anna Edlund,Karsten Zengler,Rob Knight +7 more
TL;DR: The notion of “reference frames” is defined, which provide deep intuition about the compositional nature of microbiome data, which allow reassessment of published relative abundance data to reveal reproducible microbial changes from standard sequencing output without the need for new assays.
Posted ContentDOI
Estimated transmissibility and severity of novel SARS-CoV-2 Variant of Concern 202012/01 in England
Nicholas G Davies,Sam Abbott,Rosanna C. Barnard,Christopher I Jarvis,Adam J. Kucharski,James D Munday,Carl A. B. Pearson,Timothy W Russell,Damien C. Tully,Alex D. Washburne,Tom Wenseleers,Amy Gimma,William Waites,Kerry L. M. Wong,Kevin van Zandvoort,Justin D. Silverman,Karla Diaz-Ordaz,Ruth H. Keogh,Rosalind M Eggo,Sebastian Funk,Mark Jit,Katherine E. Atkins,W. John Edmunds +22 more
TL;DR: A novel SARS-CoV-2 variant, VOC 202012/01, emerged in southeast England in November 2020 and appears to be rapidly spreading towards fixation as mentioned in this paper.
Journal ArticleDOI
A phylogenetic transform enhances analysis of compositional microbiota data
TL;DR: The PhILR transform is introduced, which incorporates microbial evolutionary models with the isometric log-ratio transform to allow off-the-shelf statistical tools to be safely applied to microbiota surveys and demonstrates that analyses of community-level structure can be applied toPhILR transformed data with performance on benchmarks rivaling or surpassing standard tools.
Journal ArticleDOI
Allogenic Fecal Microbiota Transplantation in Patients with Nonalcoholic Fatty Liver Disease Improves Abnormal Small Intestinal Permeability: A Randomized Control Trial
Laura J Craven,Adam Rahman,Seema Nair Parvathy,Melanie Beaton,Justin D. Silverman,Karim Qumosani,Irene Hramiak,Rob Hegele,Rob Hegele,Tisha JoyT. Joy,Jon Meddings,Brad L. Urquhart,Ruth Harvie,Charles A. McKenzie,Charles A. McKenzie,Kelly L. Summers,Kelly L. Summers,Gregor Reid,Gregor Reid,Jeremy P. Burton,Jeremy P. Burton,Michael Silverman,Michael Silverman +22 more
TL;DR: FMT did not improve IR as measured by HOMA-IR or hepatic PDFF but did have the potential to reduce small intestinal permeability in patients with NAFLD.