K
K. Farrugia
Publications - 5
Citations - 396
K. Farrugia is an academic researcher. The author has contributed to research in topics: Medicine & Biology. The author has an hindex of 2, co-authored 5 publications receiving 396 citations.
Papers
More filters
Journal ArticleDOI
SARS-CoV-2 Omicron virus causes attenuated disease in mice and hamsters
Peter Halfmann,Shun Iida,Kiyoko Iwatsuki-Horimoto,Tadashi Maemura,Maki Kiso,Suzanne M. Scheaffer,Tamarand L. Darling,Astha Joshi,Samantha Loeber,Gagandeep Singh,Stephanie L. Foster,Baoling Ying,James Brett Case,Zhenlu Chong,Bradley M. Whitener,Juan I. Moliva,Katharine Floyd,Michiko Ujie,Noriko Nakajima,Mutsumi Ito,R. Wright,Ryuta Uraki,Prajakta Warang,Matthew Gagne,Rongxiu Li,Yuko Sakai-Tagawa,Yanan Liu,Deanna Larson,Jorge E. Osorio,Juan P. Hernández-Ortiz,Amy R. Henry,Karl A Ciuoderis,Kelsey Florek,Mit Patel,Abby E. Odle,Lok-Yin Roy Wong,Allen C. Bateman,Zhongde Wang,Venkata Viswanadh Edara,John Franks,Trushar Jeevan,Thomas P. Fabrizio,Jennifer DeBeauchamp,Lisa Kercher,Patrick Seiler,Ana S. Gonzalez-Reiche,Emilia Mia Sordillo,Lauren A. Chang,Harm van Bakel,Viviana Simon,Bremy Alburquerque,Hala Alshammary,Angela Amoako,Shiraz Aslam,Radhika N. Banu,Cecilia Cognigni,Marlene Espinoza-Moraga,K. Farrugia,Adriana van de Guchte,Z. Khalil,Manon Laporte,Ignacio Mena,Alberto Paniz-Mondolfi,Jose Polanco,A.A. “Sonny” Rooker,L. Sominsky,Daniel C. Douek,Nancy J. Sullivan,Larissa B. Thackray,Hiroshi Ueki,Seiya Yamayoshi,Masaki Imai,Stanley Perlman,Richard J. Webby,Robert A. Seder,Mehul S. Suthar,Adolfo García-Sastre,Michael Schotsaert,Tadaki Suzuki,Adrianus C. M. Boon,Michael S. Diamond,Yoshihiro Kawaoka +81 more
TL;DR: In this paper , the authors evaluated the ability of several B.1.529 isolates to cause infection and disease in immunocompetent and human ACE2 (hACE2)-expressing mice and hamsters.
Journal ArticleDOI
A Robust, Highly Multiplexed Mass Spectrometry Assay to Identify SARS-CoV-2 Variants
Matthew M. Hernandez,Radhika N. Banu,P. Shrestha,Ana S. Gonzalez-Reiche,Adriana van de Guchte,K. Farrugia,Robert Sebra,Melissa R. Gitman,Michael D. Nowak,Carlos Cordon-Cardo,Viviana Simon,Harm van Bakel,Emilia Mia Sordillo,Nicolás Luna,Angie Ramírez,Sergio Castañeda,Luz H. Patiño,Nathalia Ballesteros,Marina Muñoz,Juan David Ramírez,Alberto Paniz-Mondolfi +20 more
TL;DR: This assay demonstrated variant-specific signatures of nucleotide/amino acid polymorphisms and underscored its utility for the detection of contemporary and emerging SARS-CoV-2 variants of concern and highlighted distinct target patterns that could be utilized to identify variants not yet defined on the panel.
Posted ContentDOI
A robust, highly multiplexed mass spectrometry assay to identify SARS-CoV-2 variants
Matthew M. Hernandez,Radhika N. Banu,P. Shrestha,Ana S. Gonzalez-Reiche,Adriana van de Guchte,K. Farrugia,Robert Sebra,Melissa R. Gitman,Michael D. Nowak,Carlos Cordon-Cardo,Viviana Simon,Harm van Bakel,Emilia Mia Sordillo,Nicolás Luna,Angie Ramírez,Sergio Castañeda,Luz H. Patiño,Nathalia Ballesteros,Marina Muñoz,Juan David Ramírez,Alberto Paniz-Mondolfi +20 more
TL;DR: These findings exemplify the power of highly multiplexed diagnostic panels to accurately call variants and the potential for target result signatures to elucidate new ones.
Journal ArticleDOI
Sequential intrahost evolution and onward transmission of SARS-CoV-2 variants
Ana S. Gonzalez-Reiche,Hala Alshammary,Sara E. Schaefer,Gopi Patel,Jose Polanco,Juan Manuel Carreño,Angela Amoako,A.A. “Sonny” Rooker,Christian Cognigni,D. Floda,Adriana van de Guchte,Z. Khalil,K. Farrugia,Nima Assad,Jian Zhang,Bremy Alburquerque,L. Sominsky,C. Gleason,Komal Srivastava,Robert Sebra,Juan David Ramírez,Radhika N. Banu,P. Shrestha,Florian Krammer,Alberto Paniz-Mondolfi,Emilia Mia Sordillo,Viviana Simon,Harm van Bakel +27 more
TL;DR: In this article , the authors describe sequential persistent SARS-CoV-2 infections in three individuals that led to the emergence, forward transmission, and continued evolution of a new Omicron sublineage, BA.1.23, over an eight-month period.
Journal ArticleDOI
Phylogenetic landscape of Monkeypox Virus (MPV) during the early outbreak in New York City, 2022.
Luz H. Patiño,Susana Guerra,Marina Muñoz,Nicolás Luna,K. Farrugia,Adriana van de Guchte,Z. Khalil,Ana S. Gonzalez-Reiche,Matthew M. Hernandez,Radhika N. Banu,P. Shrestha,Bernadette Liggayu,Adolfo Firpo Betancourt,David Reich,Carlos Cordon-Cardo,Randy A. Albrecht,Rebecca Pearl,Viviana Simon,A.A. “Sonny” Rooker,Emilia Mia Sordillo,Harm van Bakel,Adolfo García-Sastre,Dusan Bogunovic,Gustavo Palacios,Alberto E. Paniz Mondolfi,Juan David Ramírez +25 more
TL;DR: In this paper , the authors conducted a genomic analysis of 23 infected patients from New York City during the early outbreak of MPV and compared the genomic sequences of clinical isolates versus culture-passaged samples from a subset of samples.