L
Leanne Haggerty
Researcher at European Bioinformatics Institute
Publications - 19
Citations - 2311
Leanne Haggerty is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 8, co-authored 13 publications receiving 467 citations. Previous affiliations of Leanne Haggerty include University of Technology, Sydney & Maynooth University.
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Journal Article
Ensembl 2021
Kevin L. Howe,P. Achuthan,Jamie Allen,Jorge Alvarez-Jarreta,M. R. Amode,Irina M. Armean,A. G. Azov,Ruth Bennett,Jyothish Bhai,Konstantinos Billis,Sanjay Boddu,M. Charkhchi,Carla Cummins,L. Da Rin Fioretto,Claire Davidson,K. Dodiya,B. El Houdaigui,R. Fatima,Astrid Gall,C. Garcia Giron,Tiago Grego,C. Guijarro-Clarke,Leanne Haggerty,A. Hemrom,Thibaut Hourlier,Osagie G. Izuogu,Thomas Juettemann,V. Kaikala,M. Kay,Ilias Lavidas,T. Le,Diana Lemos,J. Gonzalez Martinez,J. C. Marugán,Thomas Maurel,Aoife McMahon,S. Mohanan,Benjamin Moore,Matthieu Muffato,D. N. Oheh,D. Paraschas,Anne Parker,Andrew Parton,I. Prosovetskaia,Manoj Pandian Sakthivel,A. I. A. Salam,Bianca M. Schmitt,Helen Schuilenburg,Dan Sheppard,E. Steed,Michal Szpak,M. Szuba,Kieron Taylor,Anja Thormann,Glen Threadgold,Brandon Walts,Andrea Winterbottom,Marc Chakiachvili,A. Chaubal,N. De Silva,B. Flint,Adam Frankish,Sarah E. Hunt,Gr, I. Isley, Langridge, N.,Jane E. Loveland,Fergal J. Martin,Jonathan M. Mudge,Joannella Morales,Emily Perry,Magali Ruffier,John Tate,David Thybert,Stephen J. Trevanion,Fiona Cunningham,Andrew D. Yates,Daniel R. Zerbino,Paul Flicek +76 more
TL;DR: Recent Ensembl developments are presented including two new website portals, which are designed to provide core tools and services for genomes as soon as possible and has been deployed to support large biodiversity sequencing projects.
Journal ArticleDOI
Towards complete and error-free genome assemblies of all vertebrate species
Arang Rhie,Shane A. McCarthy,Shane A. McCarthy,Olivier Fedrigo,Joana Damas,Giulio Formenti,Sergey Koren,Marcela Uliano-Silva,William Chow,Arkarachai Fungtammasan,J. H. Kim,Chul Hee Lee,Byung June Ko,Mark Chaisson,Gregory Gedman,Lindsey J. Cantin,Françoise Thibaud-Nissen,Leanne Haggerty,Iliana Bista,Iliana Bista,Michelle Smith,Bettina Haase,Jacquelyn Mountcastle,Sylke Winkler,Sylke Winkler,Sadye Paez,Jason T. Howard,Sonja C. Vernes,Sonja C. Vernes,Sonja C. Vernes,Tanya M. Lama,Frank Grützner,Wesley C. Warren,Christopher N. Balakrishnan,Dave W Burt,Jimin George,Matthew T. Biegler,David Iorns,Andrew Digby,Daryl Eason,Bruce C. Robertson,Taylor Edwards,Mark Wilkinson,George F. Turner,Axel Meyer,Andreas F. Kautt,Andreas F. Kautt,Paolo Franchini,H. William Detrich,Hannes Svardal,Hannes Svardal,Maximilian Wagner,Gavin J. P. Naylor,Martin Pippel,Milan Malinsky,Milan Malinsky,Mark Mooney,Maria Simbirsky,Brett T. Hannigan,Trevor Pesout,Marlys L. Houck,Ann C Misuraca,Sarah B. Kingan,Richard Hall,Zev N. Kronenberg,Ivan Sović,Christopher Dunn,Zemin Ning,Alex Hastie,Joyce V. Lee,Siddarth Selvaraj,Richard E. Green,Nicholas H. Putnam,Ivo Gut,Jay Ghurye,Erik Garrison,Ying Sims,Joanna Collins,Sarah Pelan,James Torrance,Alan Tracey,Jonathan Wood,Robel E. Dagnew,Dengfeng Guan,Dengfeng Guan,Sarah E. London,David F. Clayton,Claudio V. Mello,Samantha R. Friedrich,Peter V. Lovell,Ekaterina Osipova,Farooq O. Al-Ajli,Farooq O. Al-Ajli,Simona Secomandi,Heebal Kim,Constantina Theofanopoulou,Michael Hiller,Yang Zhou,Robert S. Harris,Kateryna D. Makova,Paul Medvedev,Jinna Hoffman,Patrick Masterson,Karen Clark,Fergal J. Martin,Kevin L. Howe,Paul Flicek,Brian P. Walenz,Woori Kwak,Hiram Clawson,Mark Diekhans,Luis R Nassar,Benedict Paten,Robert H. S. Kraus,Robert H. S. Kraus,Andrew J. Crawford,M. Thomas P. Gilbert,M. Thomas P. Gilbert,Guojie Zhang,Byrappa Venkatesh,Robert W. Murphy,Klaus-Peter Koepfli,Beth Shapiro,Beth Shapiro,Warren E. Johnson,Warren E. Johnson,Federica Di Palma,Tomas Marques-Bonet,Emma C. Teeling,Tandy Warnow,Jennifer A. Marshall Graves,Oliver A. Ryder,Oliver A. Ryder,David Haussler,Stephen J. O'Brien,Jonas Korlach,Harris A. Lewin,Kerstin Howe,Eugene W. Myers,Eugene W. Myers,Richard Durbin,Richard Durbin,Adam M. Phillippy,Erich D. Jarvis,Erich D. Jarvis +144 more
TL;DR: The Vertebrate Genomes Project (VGP) as mentioned in this paper is an international effort to generate high quality, complete reference genomes for all of the roughly 70,000 extant vertebrate species and to help to enable a new era of discovery across the life sciences.
Posted ContentDOI
Towards complete and error-free genome assemblies of all vertebrate species
Arang Rhie,Shane A. McCarthy,Olivier Fedrigo,Joana Damas,Giulio Formenti,Sergey Koren,Marcela Uliano-Silva,William Chow,Arkarachai Fungtammasan,Gregory Gedman,Lindsey J. Cantin,Françoise Thibaud-Nissen,Leanne Haggerty,Chul Hee Lee,Byung June Ko,J. H. Kim,Iliana Bista,Michelle Smith,Bettina Haase,Jacquelyn Mountcastle,Sylke Winkler,Sadye Paez,Jason T. Howard,Sonja C. Vernes,Tanya M. Lama,Frank Grützner,Wesley C. Warren,Christopher N. Balakrishnan,Dave W Burt,Jimin George,Matthew T. Biegler,David Iorns,Andrew Digby,Daryl Eason,Taylor Edwards,Mark Wilkinson,George F. Turner,Axel Meyer,Andreas F. Kautt,Paolo Franchini,H. William Detrich,Hannes Svardal,Maximilian Wagner,Gavin J. P. Naylor,Martin Pippel,Milan Malinsky,Mark Mooney,Maria Simbirsky,Brett T. Hannigan,Trevor Pesout,Marlys L. Houck,Ann C Misuraca,Sarah B. Kingan,Richard Hall,Zev N. Kronenberg,Jonas Korlach,Ivan Sović,Christopher Dunn,Zemin Ning,Alex Hastie,Joyce V. Lee,Siddarth Selvaraj,Richard E. Green,Nicholas H. Putnam,Jay Ghurye,Erik Garrison,Ying Sims,Joanna Collins,Sarah Pelan,James Torrance,Alan Tracey,Jonathan Wood,Dengfeng Guan,Sarah E. London,David F. Clayton,Claudio V. Mello,Samantha R. Friedrich,Peter V. Lovell,Ekaterina Osipova,Farooq O. Al-Ajli,Simona Secomandi,Heebal Kim,Constantina Theofanopoulou,Yang Zhou,Robert S. Harris,Kateryna D. Makova,Paul Medvedev,Jinna Hoffman,Patrick Masterson,Karen Clark,Fergal J. Martin,Kevin L. Howe,Paul Flicek,Brian P. Walenz,Woori Kwak,Hiram Clawson,Mark Diekhans,Luis R Nassar,Benedict Paten,Robert H. S. Kraus,Harris A. Lewin,Andrew J. Crawford,M. Thomas P. Gilbert,Guojie Zhang,Byrappa Venkatesh,Robert W. Murphy,Klaus-Peter Koepfli,Beth Shapiro,Warren E. Johnson,Federica Di Palma,Tomas Marques-Bonet,Emma C. Teeling,Tandy Warnow,Jennifer A. Marshall Graves,Oliver A. Ryder,David Haussler,Stephen J. O'Brien,Kerstin Howe,Eugene W. Myers,Richard Durbin,Adam M. Phillippy,Erich D. Jarvis +121 more
TL;DR: The Vertebrate Genomes Project is embarked on, an effort to generate high-quality, complete reference genomes for all ~70,000 extant vertebrate species and help enable a new era of discovery across the life sciences.
Journal ArticleDOI
Population genomics of the critically endangered kākāpō
Nicolas Dussex,Tom van der Valk,Hernán E. Morales,Christopher W. Wheat,David Díez-del-Molino,Johanna von Seth,Johanna von Seth,Yasmin Foster,Verena E. Kutschera,Katerina Guschanski,Katerina Guschanski,Arang Rhie,Adam M. Phillippy,Jonas Korlach,Kerstin Howe,William Chow,Sarah Pelan,Joanna D. Mendes Damas,Harris A. Lewin,Alex Hastie,Giulio Formenti,Giulio Formenti,Olivier Fedrigo,Joseph Guhlin,Thomas W. R. Harrop,Marissa F. Le Lec,Peter K. Dearden,Leanne Haggerty,Fergal J. Martin,Vamsi K. Kodali,Françoise Thibaud-Nissen,David Iorns,Michael Knapp,Neil J. Gemmell,Fiona Robertson,Ron Moorhouse,Andrew Digby,Daryl Eason,Deidre Vercoe,Jason T. Howard,Jason T. Howard,Erich D. Jarvis,Erich D. Jarvis,Bruce C. Robertson,Love Dalén,Love Dalén +45 more
TL;DR: The first genome-wide analyses of the species are reported, including a high-quality genome assembly for kākāpō, one of the first chromosome-level reference genomes sequenced by the Vertebrate Genomes Project (VGP).
Journal ArticleDOI
A chromosome-level assembly of the Atlantic herring genome—detection of a supergene and other signals of selection
Mats E. Pettersson,Christina Marie Rochus,Fan Han,Junfeng Chen,Jason Hill,Ola Wallerman,Guangyi Fan,Xiaoning Hong,Qiwu Xu,He Zhang,Shanshan Liu,Xin Liu,Leanne Haggerty,Toby Hunt,Fergal J. Martin,Paul Flicek,Ignas Bunikis,Arild Folkvord,Leif Andersson,Leif Andersson,Leif Andersson +20 more
TL;DR: A chromosome-level genome assembly based on a hybrid approach combining a de novo Pacific Biosciences (PacBio) assembly with Hi-C-supported scaffolding is delivered, allowing for analysis of previously intractable large-scale structural variation and revealing hundreds of independent loci associated with ecological adaptation.