M
Michael Schuster
Researcher at Austrian Academy of Sciences
Publications - 49
Citations - 4348
Michael Schuster is an academic researcher from Austrian Academy of Sciences. The author has contributed to research in topics: Ensembl & Chromatin. The author has an hindex of 24, co-authored 43 publications receiving 3228 citations. Previous affiliations of Michael Schuster include European Bioinformatics Institute & Wellcome Trust Sanger Institute.
Papers
More filters
Journal ArticleDOI
The Ensembl gene annotation system.
Bronwen Aken,Bronwen Aken,Sarah Ayling,Daniel Barrell,Laura Clarke,Valery Curwen,Susan Fairley,Julio Fernandez Banet,Konstantinos Billis,Carlos García Girón,Thibaut Hourlier,Kevin L. Howe,Andreas Kähäri,Felix Kokocinski,Fergal J. Martin,Daniel N. Murphy,Rishi Nag,Magali Ruffier,Michael Schuster,Y. Amy Tang,Jan-Hinnerk Vogel,Simon D. M. White,Amonida Zadissa,Paul Flicek,Stephen M. J. Searle +24 more
TL;DR: The Ensembl gene annotation system has been used to annotate over 70 different vertebrate species across a wide range of genome projects and generates the automatic alignment-based annotation for the human and mouse GENCODE gene sets.
Journal ArticleDOI
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
Kim D. Pruitt,Jennifer Harrow,Rachel A. Harte,Craig Wallin,Mark Diekhans,Donna Maglott,Steve Searle,Catherine M. Farrell,Jane E. Loveland,Barbara J. Ruef,Elizabeth M. Hart,Marie-Marthe Suner,Melissa J. Landrum,Bronwen Aken,Sarah Ayling,Robert Baertsch,Julio Fernandez-Banet,Joshua L. Cherry,Val Curwen,Michael DiCuccio,Manolis Kellis,Jennifer M. Lee,Michael F. Lin,Michael Schuster,Andrew Shkeda,Clara Amid,Garth Brown,Oksana Dukhanina,Adam Frankish,Jennifer Hart,Bonnie L. Maidak,Jonathan M. Mudge,Michael R. Murphy,Terence Murphy,Jeena Rajan,Bhanu Rajput,Lillian D. Riddick,Catherine E. Snow,Charles A. Steward,David Webb,Janet Weber,Laurens G. Wilming,Wenyu Wu,Ewan Birney,David Haussler,Tim Hubbard,James Ostell,Richard Durbin,David J. Lipman +48 more
TL;DR: The CCDS database centralizes the function of identifying well-supported, identically-annotated, protein-coding regions and indicates that the entries in the CCDS set are highly likely to represent real proteins, more so than annotations from contributing groups not included in CCDS.
Journal ArticleDOI
SARS-CoV-2 infects and replicates in cells of the human endocrine and exocrine pancreas.
Janis A. Müller,Rüdiger Groß,Carina Conzelmann,Jana Krüger,Uta Merle,Johannes Steinhart,Tatjana Weil,Lennart Koepke,Caterina Prelli Bozzo,Clarissa Read,Giorgio Fois,Tim Eiseler,Julia Gehrmann,Joanne van Vuuren,Isabel M Wessbecher,Manfred Frick,Ivan G. Costa,Markus Breunig,Beate Grüner,Lynn Peters,Michael Schuster,Stefan Liebau,Thomas Seufferlein,Steffen Stenger,Albrecht Stenzinger,Patrick E. MacDonald,Frank Kirchhoff,Konstantin M. J. Sparrer,Paul Walther,Heiko Lickert,Thomas F. E. Barth,Martin Wagner,Jan Münch,Sandra Heller,Alexander Kleger +34 more
TL;DR: In this paper, the authors identify the human pancreas as a target of SARS-CoV-2 infection and suggest that β-cell infection could contribute to the metabolic dysregulation observed in patients with COVID-19.
Journal ArticleDOI
Ensembl’s 10th year
Paul Flicek,Bronwen Aken,Benoit Ballester,Kathryn Beal,Eugene Bragin,Simon Brent,Yuan Chen,Peter Clapham,Guy Coates,Susan Fairley,Stephen Fitzgerald,Julio Fernandez-Banet,Leo Gordon,Stefan Gräf,Syed Haider,Martin Hammond,Kerstin Howe,Andrew M. Jenkinson,Nathan Johnson,Andreas Kähäri,Damian Keefe,Stephen Keenan,Rhoda Kinsella,Felix Kokocinski,Gautier Koscielny,Eugene Kulesha,Daniel Lawson,Ian Longden,Tim Massingham,William M. McLaren,Karyn Megy,Bert Overduin,Bethan Pritchard,Daniel Rios,Magali Ruffier,Michael Schuster,Guy Slater,Damian Smedley,Giulietta Spudich,Y. Amy Tang,Stephen J. Trevanion,Albert J. Vilella,Jan Hinnerk Vogel,Simon D. M. White,Steven P. Wilder,Amonida Zadissa,Ewan Birney,Fiona Cunningham,Ian Dunham,Richard Durbin,Xosé M. Fernández-Suárez,Javier Herrero,Tim Hubbard,Anne Parker,Glenn Proctor,James Smith,Stephen M. J. Searle +56 more
TL;DR: Major additions and improvements to Ensembl since the previous report include the incorporation of the human GRCh37 assembly, enhanced visualisation and data-mining options for the Ensemblembl regulatory features and continued development of the software infrastructure.
Journal ArticleDOI
Longitudinal molecular trajectories of diffuse glioma in adults
Floris P. Barthel,Kevin C. Johnson,Frederick S. Varn,Anzhela D. Moskalik,Georgette Tanner,Emre Kocakavuk,Kevin J. Anderson,Olajide Abiola,Kenneth Aldape,Kristin Alfaro,Donát Alpár,Donát Alpár,Samirkumar B. Amin,David M. Ashley,Pratiti Bandopadhayay,Pratiti Bandopadhayay,Jill S. Barnholtz-Sloan,Rameen Beroukhim,Rameen Beroukhim,Christoph Bock,Christoph Bock,Priscilla K. Brastianos,Daniel J. Brat,Andrew R Brodbelt,Alexander F. Bruns,Ketan R. Bulsara,Aruna Chakrabarty,Arnab Chakravarti,Jeffrey H. Chuang,Elizabeth B. Claus,Elizabeth B. Claus,Elizabeth J. Cochran,Jennifer Connelly,Joseph F. Costello,Gaetano Finocchiaro,Michael N. C. Fletcher,Pim J. French,Hui K Gan,Hui K Gan,Mark R. Gilbert,Peter Gould,Matthew R. Grimmer,Antonio Iavarone,Azzam Ismail,Michael D. Jenkinson,Mustafa Khasraw,Hoon Kim,Mathilde C.M. Kouwenhoven,Peter S. LaViolette,Meihong Li,Peter Lichter,Keith L. Ligon,Keith L. Ligon,Allison Lowman,Tathiane M. Malta,Tali Mazor,Kerrie L. McDonald,Annette M. Molinaro,Do-Hyun Nam,Naema Nayyar,Ho Keung Ng,Chew Yee Ngan,Simone P. Niclou,Johanna M. Niers,Houtan Noushmehr,Javad Noorbakhsh,D. Ryan Ormond,Chul-Kee Park,Laila M. Poisson,Raul Rabadan,Raul Rabadan,Bernhard Radlwimmer,Ganesh Rao,Guido Reifenberger,Jason K. Sa,Michael Schuster,Brian L. Shaw,Susan C Short,Peter A. E. Sillevis Smitt,Andrew E. Sloan,Andrew E. Sloan,Marion Smits,Hiromichi Suzuki,Ghazaleh Tabatabai,Erwin G. Van Meir,Colin Watts,Michael Weller,Pieter Wesseling,Bart A. Westerman,Georg Widhalm,Adelheid Woehrer,W. K. Alfred Yung,Gelareh Zadeh,Jason T. Huse,John de Groot,Lucy F. Stead,Roel G.W. Verhaak +96 more
TL;DR: The results suggest that the strongest selective pressures occur during early glioma development and that current therapies shape this evolution in a largely stochastic manner.