K
Krzysztof J. Gorgolewski
Researcher at Stanford University
Publications - 127
Citations - 15018
Krzysztof J. Gorgolewski is an academic researcher from Stanford University. The author has contributed to research in topics: Neuroimaging & Data sharing. The author has an hindex of 42, co-authored 124 publications receiving 9910 citations. Previous affiliations of Krzysztof J. Gorgolewski include Max Planck Society & University of Edinburgh.
Papers
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Journal ArticleDOI
fMRIPrep: a robust preprocessing pipeline for functional MRI
Oscar Esteban,Christopher J. Markiewicz,Ross Blair,Craig A. Moodie,Ayse Ilkay Isik,Asier Erramuzpe,James D. Kent,Mathias Goncalves,Elizabeth DuPre,Snyder M,Hiroyuki Oya,Satrajit S. Ghosh,Satrajit S. Ghosh,Jessey Wright,Joke Durnez,Russell A. Poldrack,Krzysztof J. Gorgolewski +16 more
TL;DR: fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data that dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Journal ArticleDOI
Nipype: A Flexible, Lightweight and Extensible Neuroimaging Data Processing Framework in Python
Krzysztof J. Gorgolewski,Christopher Burns,Cindee Madison,Dav Clark,Yaroslav O. Halchenko,Michael Waskom,Satrajit S. Ghosh +6 more
TL;DR: Nipype solves issues by providing Interfaces to existing neuroimaging software with uniform usage semantics and by facilitating interaction between these packages using Workflows, and provides an environment that encourages interactive exploration of algorithms, eases the design of Workflows within and between packages, and reduces the learning Curve.
Journal ArticleDOI
The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments.
Krzysztof J. Gorgolewski,Tibor Auer,Vince D. Calhoun,R. Cameron Craddock,Samir Das,Eugene P. Duff,Guillaume Flandin,Satrajit S. Ghosh,Tristan Glatard,Yaroslav O. Halchenko,Daniel A. Handwerker,Michael Hanke,David Keator,Xiangrui Li,Zachary Michael,Camille Maumet,B. Nolan Nichols,Thomas E. Nichols,John Pellman,Jean-Baptiste Poline,Jean-Baptiste Poline,Ariel Rokem,Gunnar Schaefer,Vanessa Sochat,William Triplett,Jessica A. Turner,Gaël Varoquaux,Russell A. Poldrack +27 more
TL;DR: The Brain Imaging Data Structure (BIDS) is developed, a standard for organizing and describing MRI datasets that uses file formats compatible with existing software, unifies the majority of practices already common in the field, and captures the metadata necessary for most common data processing operations.
Journal ArticleDOI
Scanning the horizon: towards transparent and reproducible neuroimaging research
Russell A. Poldrack,Chris I. Baker,Joke Durnez,Krzysztof J. Gorgolewski,Paul M. Matthews,Marcus R. Munafò,Thomas E. Nichols,Jean-Baptiste Poline,Edward Vul,Tal Yarkoni +9 more
TL;DR: How the field of functional MRI should evolve is described to produce the most meaningful and reliable answers to neuroscientific questions.
Posted ContentDOI
FMRIPrep: a robust preprocessing pipeline for functional MRI
Oscar Esteban,Christopher J. Markiewicz,Ross Blair,Craig A. Moodie,Ayse Ilkay Isik,Asier Erramuzpe,James D. Kent,Mathias Goncalves,Elizabeth DuPre,Snyder M,Hiroyuki Oya,Satrajit S. Ghosh,Jessey Wright,Joke Durnez,Russell A. Poldrack,Krzysztof J. Gorgolewski +15 more
TL;DR: FMRIPrep has the potential to transform fMRI research by equipping neuroscientists with a high-quality, robust, easy-to-use and transparent preprocessing workflow which can help ensure the validity of inference and the interpretability of their results.