V
Vanessa Sochat
Researcher at Stanford University
Publications - 47
Citations - 4175
Vanessa Sochat is an academic researcher from Stanford University. The author has contributed to research in topics: Computer science & Singularity. The author has an hindex of 14, co-authored 38 publications receiving 2593 citations.
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Journal ArticleDOI
The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments.
Krzysztof J. Gorgolewski,Tibor Auer,Vince D. Calhoun,R. Cameron Craddock,Samir Das,Eugene P. Duff,Guillaume Flandin,Satrajit S. Ghosh,Tristan Glatard,Yaroslav O. Halchenko,Daniel A. Handwerker,Michael Hanke,David Keator,Xiangrui Li,Zachary Michael,Camille Maumet,B. Nolan Nichols,Thomas E. Nichols,John Pellman,Jean-Baptiste Poline,Jean-Baptiste Poline,Ariel Rokem,Gunnar Schaefer,Vanessa Sochat,William Triplett,Jessica A. Turner,Gaël Varoquaux,Russell A. Poldrack +27 more
TL;DR: The Brain Imaging Data Structure (BIDS) is developed, a standard for organizing and describing MRI datasets that uses file formats compatible with existing software, unifies the majority of practices already common in the field, and captures the metadata necessary for most common data processing operations.
Journal ArticleDOI
Singularity: Scientific containers for mobility of compute.
TL;DR: The ability to create and deploy reproducible environments across these centers, a previously unmet need, makes Singularity a game changing development for computational science.
Journal ArticleDOI
Sustainable data analysis with Snakemake.
Felix Mölder,Kim Philipp Jablonski,Kim Philipp Jablonski,Brice Letcher,Michael B Hall,Christopher Tomkins-Tinch,Christopher Tomkins-Tinch,Vanessa Sochat,Jan Forster,Jan Forster,Soohyun Lee,Sven Twardziok,Alexander Kanitz,Alexander Kanitz,Andreas Wilm,Manuel Holtgrewe,Sven Rahmann,Sven Nahnsen,Johannes Köster,Johannes Köster +19 more
TL;DR: It is shown how the popular workflow management system Snakemake can be used to guarantee reproducibility, and how it enables an ergonomic, combined, unified representation of all steps involved in data analysis, ranging from raw data processing, to quality control and fine-grained, interactive exploration and plotting of final results.
Journal ArticleDOI
NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain
Krzysztof J. Gorgolewski,Krzysztof J. Gorgolewski,Gaël Varoquaux,Gabriel Rivera,Yannick Schwartz,Satrajit S. Ghosh,Camille Maumet,Vanessa Sochat,Thomas E. Nichols,Russell A. Poldrack,Jean-Baptiste Poline,Tal Yarkoni,Daniel S. Margulies +12 more
TL;DR: NeuroVault as discussed by the authors is a web-based repository that allows researchers to store, share, visualize, and decode statistical maps of the human brain without the need to install additional software.
Journal ArticleDOI
Long-term neural and physiological phenotyping of a single human
Russell A. Poldrack,Russell A. Poldrack,Timothy O. Laumann,Oluwasanmi Koyejo,Brenda Gregory,Ashleigh M. Hover,Mei Yen Chen,Krzysztof J. Gorgolewski,Jeffrey J. Luci,Sung Jun Joo,Ryan L. Boyd,Scott Patrick Hunicke-Smith,Zack B. Simpson,W Thomas Caven,Vanessa Sochat,James M. Shine,Evan M. Gordon,Abraham Z. Snyder,Babatunde Adeyemo,Steven E. Petersen,David C. Glahn,D. Reese McKay,Joanne E. Curran,Harald H H Göring,Melanie A. Carless,John Blangero,Robert F. Dougherty,Alexander Leemans,Daniel A. Handwerker,Laurie Frick,Edward M. Marcotte,Jeanette A. Mumford +31 more
TL;DR: The MyConnectome project demonstrates dynamic changes in brain connectivity over the timescales of days to months, and relations between brain connectivity, gene expression and metabolites.