K
Kyle M. Hernandez
Researcher at University of Chicago
Publications - 41
Citations - 1812
Kyle M. Hernandez is an academic researcher from University of Chicago. The author has contributed to research in topics: Gene & Gene expression. The author has an hindex of 14, co-authored 36 publications receiving 1223 citations. Previous affiliations of Kyle M. Hernandez include Howard Hughes Medical Institute & University of Texas at Austin.
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Journal ArticleDOI
Genotype-by-Environment Interaction and Plasticity: Exploring Genomic Responses of Plants to the Abiotic Environment
TL;DR: It is revealed that G×E is common, often caused by changes in the magnitude of genetic effects in response to the environment, and associated with diverse genetic factors and molecular variants.
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Density of immunogenic antigens does not explain the presence or absence of the T-cell-inflamed tumor microenvironment in melanoma.
Stefani Spranger,Jason J. Luke,Riyue Bao,Yuanyuan Zha,Kyle M. Hernandez,Yan Li,Alexander P Gajewski,Jorge Andrade,Thomas F. Gajewski +8 more
TL;DR: The results indicate that lack of spontaneous immune infiltration in solid tumors is unlikely to be due to lack of antigens, and strategies that improve T-cell infiltration into tumors may therefore be able to facilitate clinical response to immunotherapy once antIGens become recognized.
Journal ArticleDOI
Proteomics reveals NNMT as a master metabolic regulator of cancer-associated fibroblasts
Mark A. Eckert,Fabian Coscia,Fabian Coscia,Agnieszka Chryplewicz,Jae Won Chang,Kyle M. Hernandez,Shawn Pan,Samantha M. Tienda,Dominik A Nahotko,Gang Li,Ivana Blaženović,Ricardo R. Lastra,Marion Curtis,S. Diane Yamada,Ruth Perets,Stephanie M. McGregor,Jorge Andrade,Oliver Fiehn,Raymond E. Moellering,Matthias Mann,Matthias Mann,Ernst Lengyel +21 more
TL;DR: A label-free proteomic workflow is developed to analyse as few as 5,000 formalin-fixed, paraffin-embedded cells microdissected from each compartment and finds that stromal methyltransferase nicotinamide N-methyltransferase (NNMT) regulates the transition of normal fibroblasts to cancer-associated fibro Blasts through histone methylation and promotes ovarian cancer growth and metastasis.
Journal ArticleDOI
Genomics of Ovarian Cancer Progression Reveals Diverse Metastatic Trajectories Including Intraepithelial Metastasis to the Fallopian Tube.
Mark A. Eckert,Shawn Pan,Kyle M. Hernandez,Rachel M. Loth,Jorge Andrade,Samuel L. Volchenboum,Pieter W. Faber,Anthony G. Montag,Ricardo R. Lastra,Marcus E. Peter,S. Diane Yamada,Ernst Lengyel +11 more
TL;DR: The putative precursor lesions for HGSOC, STIC, possess most of the genomic aberrations present in advanced cancers, and a proportion of STIC represent intraepithelial metastases to the fallopian tube rather than the origin of H GSOC.
Journal ArticleDOI
Before and After: Comparison of Legacy and Harmonized TCGA Genomic Data Commons’ Data
Galen F. Gao,Joel S. Parker,Sheila Reynolds,Tiago C. Silva,Liang-Bo Wang,Wanding Zhou,Rehan Akbani,Matthew H. Bailey,Saianand Balu,Benjamin P. Berman,Denise Brooks,Hu Chen,Andrew D. Cherniack,John A. Demchok,Li Ding,Ina Felau,Sharon Gaheen,Daniela S. Gerhard,David I. Heiman,Kyle M. Hernandez,Katherine A. Hoadley,Reyka G Jayasinghe,Anab Kemal,Theo A. Knijnenburg,Peter W. Laird,Michael K A Mensah,Andrew J. Mungall,A. Gordon Robertson,Hui Shen,Roy Tarnuzzer,Zhining Wang,Matthew A. Wyczalkowski,Liming Yang,Jean C. Zenklusen,Z. Zhang,Han Liang,Han Liang,Michael S. Noble +37 more
TL;DR: The results demonstrate that the hg19 and hg38 TCGA datasets are very highly concordant, promote informed use of either legacy or harmonized omics data, and provide a rubric that encourages similar comparisons as new data emerge and reference data evolve.