M
M. de Vries
Researcher at Utrecht University
Publications - 11
Citations - 1611
M. de Vries is an academic researcher from Utrecht University. The author has contributed to research in topics: DNA barcoding & Intestinal absorption. The author has an hindex of 9, co-authored 11 publications receiving 1084 citations. Previous affiliations of M. de Vries include Centraalbureau voor Schimmelcultures.
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Journal ArticleDOI
Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation.
Duong Vu,Marizeth Groenewald,M. de Vries,Thies Gehrmann,B. Stielow,Ursula Eberhardt,Abdullah M. S. Al-Hatmi,Johannes Z. Groenewald,Gianluigi Cardinali,Jos Houbraken,Teun Boekhout,Teun Boekhout,Pedro W. Crous,Pedro W. Crous,Pedro W. Crous,Vincent Robert,G.J.M. Verkley +16 more
TL;DR: The DNA barcodes used in this study have been deposited to GenBank and will also be publicly available at the Westerdijk Institute's website as reference sequences for fungal identification, marking an unprecedented data release event in global fungal barcoding efforts to date.
Journal ArticleDOI
One fungus, which genes? Development and assessment of universal primers for potential secondary fungal DNA barcodes.
J. B. Stielow,C.A. Lévesque,Keith A. Seifert,Wieland Meyer,Laszlo Irinyi,D. Smits,R. Renfurm,G.J.M. Verkley,Marizeth Groenewald,D. Chaduli,Anne Lomascolo,S. Welti,Laurence Lesage-Meessen,Anne Favel,Abdullah M. S. Al-Hatmi,Ulrike Damm,Neriman Yilmaz,Jos Houbraken,Lorenzo Lombard,W. Quaedvlieg,Manfred Binder,Lea A. I. Vaas,D. Vu,Andrey Yurkov,Dominik Begerow,O. Roehl,Marco Alexandre Guerreiro,Álvaro Fonseca,Kittipan Samerpitak,A.D. van Diepeningen,Somayeh Dolatabadi,Leandro F. Moreno,Serge Casaregola,S. Mallet,N. Jacques,Luca Roscini,Eleonora Egidi,C. Bizet,Dea Garcia-Hermoso,María P. Martín,Shuwen Deng,Johannes Z. Groenewald,Teun Boekhout,Z.W. de Beer,Irene Barnes,Tuan A. Duong,Michael J. Wingfield,G.S. de Hoog,Pedro W. Crous,Christopher T. Lewis,Sarah Hambleton,Tarek A. A. Moussa,Hassan S. Al-Zahrani,Omar A. Almaghrabi,Gerry Louis-Seize,R. Assabgui,Wayne A. McCormick,G. Omer,K. Dukik,Gianluigi Cardinali,Ursula Eberhardt,M. de Vries,Vincent Robert +62 more
TL;DR: A novel high fidelity primer pair for TEF1α has potential as a supplementary DNA barcode with superior resolution to ITS, while TOPI and LNS2 are attractive for the Pucciniomycotina, for which universal primers for ribosomal subunits often fail.
Journal ArticleDOI
Alternaria section Alternaria: Species, formae speciales or pathotypes?
J.H.C. Woudenberg,Michael F. Seidl,Johannes Z. Groenewald,M. de Vries,J. B. Stielow,Bart P. H. J. Thomma,Pedro W. Crous +6 more
TL;DR: This manuscript provides guidelines for the naming and identification of phylogenetic species in Alternaria sect.
Journal ArticleDOI
DNA barcoding analysis of more than 9 000 yeast isolates contributes to quantitative thresholds for yeast species and genera delimitation.
Duong Vu,Marizeth Groenewald,S. Szoke,Gianluigi Cardinali,Ursula Eberhardt,B. Stielow,M. de Vries,Gerard J. Verkleij,Pedro W. Crous,T. Boekhout,Vincent Robert +10 more
TL;DR: Using ITS and LSU barcodes, it is shown that the recent reclassifications of basidiomycetous yeasts in 2015 have made a significant improvement for the generic taxonomy of those organisms.
Journal ArticleDOI
Phylogeny and taxonomy of meristematic rock-inhabiting black fungi in the Dothideomycetes based on multi-locus phylogenies
Eleonora Egidi,Eleonora Egidi,G.S. de Hoog,Daniela Isola,Silvano Onofri,W. Quaedvlieg,M. de Vries,Gerard J.M. Verkley,J. B. Stielow,Laura Zucconi,Laura Selbmann +10 more
TL;DR: It is confirmed that most rock inhabiting-fungi (RIF) are highly polyphyletic among Dothideomycetidae, mainly within the order Capnodiales, an order otherwise incorporating several families of major plant pathological importance.