M
Mathias Walzer
Researcher at European Bioinformatics Institute
Publications - 31
Citations - 8832
Mathias Walzer is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Proteomics Standards Initiative & Biology. The author has an hindex of 16, co-authored 29 publications receiving 4969 citations. Previous affiliations of Mathias Walzer include Wellcome Trust & University of Tübingen.
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Journal ArticleDOI
The PRIDE database and related tools and resources in 2019: improving support for quantification data.
Yasset Perez-Riverol,Attila Csordas,Jingwen Bai,Manuel Bernal-Llinares,Suresh Hewapathirana,Deepti J. Kundu,Avinash Inuganti,Johannes Griss,Johannes Griss,Gerhard Mayer,Martin Eisenacher,Enrique Perez,Julian Uszkoreit,Julianus Pfeuffer,Timo Sachsenberg,Şule Yılmaz,Shivani Tiwary,Juergen Cox,Enrique Audain,Mathias Walzer,Andrew F. Jarnuczak,Tobias Ternent,Alvis Brazma,Juan Antonio Vizcaíno +23 more
TL;DR: Key statistics on the current data contents and volume of downloads are outlined, and how PRIDE data are starting to be disseminated to added-value resources including Ensembl, UniProt and Expression Atlas are outlined.
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The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences.
Yasset Perez-Riverol,Jingwen Bai,Chakradhar Bandla,David García-Seisdedos,Suresh Hewapathirana,Selvakumar Kamatchinathan,Deepti J. Kundu,Ananth Prakash,Anika Frericks-Zipper,Martin Eisenacher,Mathias Walzer,Shengbo Wang,Alvis Brazma,Juan Antonio Vizcaíno +13 more
TL;DR: The PRIDE database as discussed by the authors is the world's largest data repository of mass spectrometry-based proteomics data and is one of the founding members of the global ProteomeXchange (PX) consortium.
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OpenMS: a flexible open-source software platform for mass spectrometry data analysis
Hannes L. Röst,Hannes L. Röst,Timo Sachsenberg,Stephan Aiche,Chris Bielow,Hendrik Weisser,Fabian Aicheler,Sandro Andreotti,Hans-Christian Ehrlich,Petra Gutenbrunner,Erhan Kenar,Xiao Liang,Sven Nahnsen,Lars Nilse,Julianus Pfeuffer,George Rosenberger,Marc Rurik,Uwe Schmitt,Johannes Veit,Mathias Walzer,David Wojnar,Witold Wolski,Oliver Schilling,Jyoti S. Choudhary,Lars Malmström,Lars Malmström,Ruedi Aebersold,Ruedi Aebersold,Knut Reinert,Knut Reinert,Oliver Kohlbacher +30 more
TL;DR: OpenMS 2.0 is presented, a robust, open-source, cross-platform software specifically designed for the flexible and reproducible analysis of high-throughput MS data.
Journal ArticleDOI
Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets
Johannes Griss,Yasset Perez-Riverol,Steve Lewis,David L. Tabb,José A. Dianes,Noemi del-Toro,Marc Rurik,Mathias Walzer,Oliver Kohlbacher,Henning Hermjakob,Rui Wang,Juan Antonio Vizcaíno +11 more
TL;DR: Spectrum clustering at a large scale was used to identify ∼20% of the consistently unidentified MS spectra, which is intended to encourage and simplify further investigation into these unidentified spectra.
Journal ArticleDOI
The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience
Johannes Griss,Johannes Griss,Andrew R. Jones,Timo Sachsenberg,Mathias Walzer,Laurent Gatto,Jürgen Hartler,Gerhard G. Thallinger,Reza M. Salek,Christoph Steinbeck,Nadin Neuhauser,Jürgen Cox,Steffen Neumann,Jun Fan,Florian Reisinger,Qing-Wei Xu,Qing-Wei Xu,Noemi del Toro,Yasset Perez-Riverol,Fawaz Ghali,Nuno Bandeira,Ioannis Xenarios,Ioannis Xenarios,Oliver Kohlbacher,Juan Antonio Vizcaíno,Henning Hermjakob +25 more
TL;DR: The mzTab file format for MS-based proteomics and metabolomics results is developed, intended as a lightweight supplement to the existing standard XML-based file formats, providing a comprehensive summary, similar in concept to the supplemental material of a scientific publication.