O
Olof Karlberg
Researcher at Uppsala University
Publications - 16
Citations - 2988
Olof Karlberg is an academic researcher from Uppsala University. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 10, co-authored 16 publications receiving 2700 citations. Previous affiliations of Olof Karlberg include Science for Life Laboratory.
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Journal ArticleDOI
Transcriptome and genome sequencing uncovers functional variation in humans
Tuuli Lappalainen,Michael Sammeth,Marc R. Friedländer,Peter A C 't Hoen,Jean Monlong,Manuel A. Rivas,Mar Gonzàlez-Porta,Natalja Kurbatova,Thasso Griebel,Pedro G. Ferreira,Matthias Barann,Thomas Wieland,Liliana Greger,Maarten van Iterson,Jonas Carlsson Almlöf,Paolo Ribeca,Irina Pulyakhina,Daniela Esser,Thomas Giger,Andrew Tikhonov,Marc Sultan,Gabrielle Bertier,Daniel G. MacArthur,Daniel G. MacArthur,Monkol Lek,Monkol Lek,Esther Lizano,Henk P. J. Buermans,Ismael Padioleau,Ismael Padioleau,Thomas Schwarzmayr,Olof Karlberg,Halit Ongen,Halit Ongen,Helena Kilpinen,Helena Kilpinen,Sergi Beltran,Marta Gut,Katja Kahlem,Vyacheslav Amstislavskiy,Oliver Stegle,Matti Pirinen,Stephen B. Montgomery,Stephen B. Montgomery,Peter Donnelly,Mark I. McCarthy,Mark I. McCarthy,Paul Flicek,Tim M. Strom,Hans Lehrach,Stefan Schreiber,Ralf Sudbrak,Angel Carracedo,Stylianos E. Antonarakis,Robert Häsler,Ann-Christine Syvänen,Gert-Jan B. van Ommen,Alvis Brazma,Thomas Meitinger,Philip Rosenstiel,Roderic Guigó,Ivo Gut,Xavier Estivill,Emmanouil T. Dermitzakis,Emmanouil T. Dermitzakis +64 more
TL;DR: Se sequencing and deep analysis of messenger RNA and microRNA from lymphoblastoid cell lines of 462 individuals from the 1000 Genomes Project—the first uniformly processed high-throughput RNA-sequencing data from multiple human populations with high-quality genome sequences discover extremely widespread genetic variation affecting the regulation of most genes.
Journal ArticleDOI
On the origin of mitochondria: a genomics perspective
TL;DR: The strong relationship with alpha-proteobacterial genes observed for some mitochondrial genes, combined with the lack of such a relationship for others, indicates that the modern mitochondrial proteome is the product of both reductive and expansive processes.
Journal ArticleDOI
Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories
Peter A C 't Hoen,Marc R. Friedländer,Jonas Carlsson Almlöf,Michael Sammeth,Irina Pulyakhina,Seyed Yahya Anvar,Jeroen F.J. Laros,Jeroen F.J. Laros,Henk P. J. Buermans,Olof Karlberg,Mathias Brännvall,Johan T. den Dunnen,Johan T. den Dunnen,Gert-Jan B. van Ommen,Ivo Gut,Roderic Guigó,Xavier Estivill,Ann-Christine Syvänen,Emmanouil T. Dermitzakis,Emmanouil T. Dermitzakis,Tuuli Lappalainen,Tuuli Lappalainen +21 more
TL;DR: It is concluded that distributing RNA sequencing among different laboratories is feasible, given proper standardization and randomization procedures, and a set of quality measures and guidelines for assessing technical biases in RNA-seq data are provided.
Journal ArticleDOI
The dual origin of the yeast mitochondrial proteome.
TL;DR: The proposed scheme for the origin of mitochondria based on phylogenetic reconstructions with more than 400 yeast nuclear genes that encode mitochondrial proteins suggests that the majority of genes encoding yeast mitochondrial proteins are descendants of two different genomic lineages that have evolved in different modes.
Journal ArticleDOI
Deep Origin of Plastid/Parasite ATP/ADP Translocases
TL;DR: The results are consistent with an early duplication and divergence of the five ATP/ADP translocases within the rickettsial lineage, and a comparison of the phylogenetic depths of the mitochondrial and the plastid/parasite ATP/adsp translocase indicates a deep origin for both transporters.