M
Mar Gonzàlez-Porta
Researcher at European Bioinformatics Institute
Publications - 18
Citations - 3441
Mar Gonzàlez-Porta is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: RNA splicing & Gene. The author has an hindex of 13, co-authored 17 publications receiving 2926 citations. Previous affiliations of Mar Gonzàlez-Porta include Illumina & Swiss Institute of Bioinformatics.
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Journal ArticleDOI
Transcriptome and genome sequencing uncovers functional variation in humans
Tuuli Lappalainen,Michael Sammeth,Marc R. Friedländer,Peter A C 't Hoen,Jean Monlong,Manuel A. Rivas,Mar Gonzàlez-Porta,Natalja Kurbatova,Thasso Griebel,Pedro G. Ferreira,Matthias Barann,Thomas Wieland,Liliana Greger,Maarten van Iterson,Jonas Carlsson Almlöf,Paolo Ribeca,Irina Pulyakhina,Daniela Esser,Thomas Giger,Andrew Tikhonov,Marc Sultan,Gabrielle Bertier,Daniel G. MacArthur,Daniel G. MacArthur,Monkol Lek,Monkol Lek,Esther Lizano,Henk P. J. Buermans,Ismael Padioleau,Ismael Padioleau,Thomas Schwarzmayr,Olof Karlberg,Halit Ongen,Halit Ongen,Helena Kilpinen,Helena Kilpinen,Sergi Beltran,Marta Gut,Katja Kahlem,Vyacheslav Amstislavskiy,Oliver Stegle,Matti Pirinen,Stephen B. Montgomery,Stephen B. Montgomery,Peter Donnelly,Mark I. McCarthy,Mark I. McCarthy,Paul Flicek,Tim M. Strom,Hans Lehrach,Stefan Schreiber,Ralf Sudbrak,Angel Carracedo,Stylianos E. Antonarakis,Robert Häsler,Ann-Christine Syvänen,Gert-Jan B. van Ommen,Alvis Brazma,Thomas Meitinger,Philip Rosenstiel,Roderic Guigó,Ivo Gut,Xavier Estivill,Emmanouil T. Dermitzakis,Emmanouil T. Dermitzakis +64 more
TL;DR: Se sequencing and deep analysis of messenger RNA and microRNA from lymphoblastoid cell lines of 462 individuals from the 1000 Genomes Project—the first uniformly processed high-throughput RNA-sequencing data from multiple human populations with high-quality genome sequences discover extremely widespread genetic variation affecting the regulation of most genes.
Journal ArticleDOI
Expression Atlas update—a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments
Robert Petryszak,Tony Burdett,Benedetto Fiorelli,Nuno A. Fonseca,Mar Gonzàlez-Porta,Emma Hastings,Wolfgang Huber,Simon Jupp,Maria Keays,Nataliya Kryvych,Julie A. McMurry,John C. Marioni,James Malone,Karyn Megy,Gabriella Rustici,Y. Amy Tang,Jan Taubert,Eleanor Williams,Oliver Mannion,Helen Parkinson,Alvis Brazma +20 more
TL;DR: The new version of Expression Atlas introduces the concept of ‘baseline’ expression, i.e. gene and splice variant abundance levels in healthy or untreated conditions, such as tissues or cell types, in order to maximize the biological value provided to the user.
Journal ArticleDOI
Best practices for benchmarking germline small-variant calls in human genomes.
Peter Krusche,Len Trigg,Paul C. Boutros,Christopher E. Mason,Francisco M. De La Vega,Benjamin L. Moore,Mar Gonzàlez-Porta,Michael A. Eberle,Zivana Tezak,Samir Lababidi,Rebecca Truty,George Asimenos,Birgit Funke,Mark Fleharty,Brad Chapman,Marc L. Salit,Justin M. Zook,Global Alliance for Genomics +17 more
TL;DR: This work provides guidance on how to match variant calls with different representations, define standard performance metrics, and stratify performance by variant type and genome context, and describes limitations of high-confidence calls and regions that can be used as truth sets.
Journal ArticleDOI
Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene
TL;DR: The findings suggest that the transcriptome from protein coding loci is dominated by one transcript per gene and that not all the transcripts that contribute to transcriptome diversity are equally likely to contribute to protein diversity.
Journal ArticleDOI
Variation in genomic landscape of clear cell renal cell carcinoma across Europe
Ghislaine Scelo,Yasser Riazalhosseini,Liliana Greger,Louis Letourneau,Mar Gonzàlez-Porta,Magdalena B. Wozniak,Mathieu Bourgey,Patricia Harnden,Lars Egevad,Sharon Jackson,Mehran Karimzadeh,Madeleine Arseneault,Pierre Lepage,Alexandre How-Kit,Antoine Daunay,Victor Renault,Hélène Blanché,Emmanuel Tubacher,Jeremy Sehmoun,Juris Viksna,Edgars Celms,Martins Opmanis,Andris Zarins,Naveen S. Vasudev,Morag Seywright,Behnoush Abedi-Ardekani,Christine Carreira,Peter Selby,Jon Cartledge,Graham Byrnes,Jiri Zavadil,Jing Su,Ivana Holcatova,Antonin Brisuda,David Zaridze,Anush Moukeria,Lenka Foretova,Marie Navratilova,Dana Mates,Viorel Jinga,Artem V. Artemov,Artem V. Nedoluzhko,Alexander Mazur,Sergey M. Rastorguev,Eugenia S. Boulygina,Simon Heath,Marta Gut,Marie-Therese Bihoreau,Doris Lechner,Mario Foglio,Ivo Gut,Konstantin G. Skryabin,Egor Prokhortchouk,Anne Cambon-Thomsen,Johan Rung,Guillaume Bourque,Paul Brennan,Jörg Tost,Rosamonde E. Banks,Alvis Brazma,G Mark Lathrop +60 more
TL;DR: The results show that the processes underlyingccRCC tumorigenesis may vary in different populations and suggest that AA may be an important ccRCC carcinogen in Romania, a finding with major public health implications.